Analytic combinatorics for bioinformatics I: seeding methods

Abstract

Seeding heuristics are the most widely used strategies to speed up sequence alignment in bioinformatics. Such strategies are most successful if they are calibrated, so that the speed-versus-accuracy trade-off can be properly tuned. In the widely used case of read mapping, it has been so far impossible to predict the success rate of competing seeding… (More)

Topics

31 Figures and Tables

Slides referencing similar topics