An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)

@article{Vasilikopoulos2020AnIP,
  title={An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)},
  author={Alexandros Vasilikopoulos and Bernhard Misof and Karen Meusemann and Doria Lieberz and Tom{\'a}{\vs} Flouri and Rolf G. Beutel and Oliver Niehuis and Torsten Wappler and Jes Rust and Ralph S. Peters and Alexander Donath and Lars Podsiadlowski and Christoph Mayer and Daniela Bartel and Alexander B{\"o}hm and Shanlin Liu and Paschalia Kapli and Carola Greve and James E. Jepson and Xingyue Liu and Xin Zhou and Horst Asp{\"o}ck and Ulrike Asp{\"o}ck},
  journal={BMC Evolutionary Biology},
  year={2020},
  volume={20}
}
Background The latest advancements in DNA sequencing technologies have facilitated the resolution of the phylogeny of insects, yet parts of the tree of Holometabola remain unresolved. The phylogeny of Neuropterida has been extensively studied, but no strong consensus exists concerning the phylogenetic relationships within the order Neuroptera. Here, we assembled a novel transcriptomic dataset to address previously unresolved issues in the phylogeny of Neuropterida and to infer divergence times… 
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    Cladistics : the international journal of the Willi Hennig Society
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References

SHOWING 1-10 OF 312 REFERENCES
The Mitochondrial Genomes of Neuropteridan Insects and Implications for the Phylogeny of Neuroptera
The higher-level phylogeny of Neuroptera is explored here based on the newly determined mitochondrial genomic data, with a special focus on the interfamilial relationships of this group. Despite
Single-copy nuclear genes resolve the phylogeny of the holometabolous insects
TLDR
Evidence from nucleotide sequences of six single-copy nuclear protein coding genes used to reconstruct phylogenetic relationships and estimate evolutionary divergence times is presented, finding strong support for a close relationship between Coleoptera (beetles) and Strepsiptera, a previously proposed, but analytically controversial relationship.
The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data
TLDR
The combination of well-resolved phylogenies obtained by phylogenomic analyses and well-documented extensive morphological datasets is an appropriate basis for reconstructing complex morphological transformations and for the inference of evolutionary histories.
Gene Selection and Evolutionary Modeling Affect Phylogenomic Inference of Neuropterida Based on Transcriptome Data
TLDR
How both data selection and model selection influence phylogenomic analyses of large-scale data matrices comprehensively is illustrated.
9-Genes Reinforce the Phylogeny of Holometabola and Yield Alternate Views on the Phylogenetic Placement of Strepsiptera
TLDR
The results unequivocally support the monophyly of Neuropteroidea, but recover Strepsiptera either derived from within polyphagan beetles (order Coleoptera), or in a position sister to Neuropterida.
The phylogeny of the Neuropterida: long lasting and current controversies and challenges (Insecta: Endopterygota)
TLDR
The phylogenetic relationships of Neuropterida and their position within Endopterygota are of interest with respect to the reconstruction of character evolution and the evolution of life styles of the larvae.
Evolution of lacewings and allied orders using anchored phylogenomics (Neuroptera, Megaloptera, Raphidioptera)
TLDR
Analysis of anchored hybrid enrichment (AHE) data under a variety of analytical parameters recovered a well‐resolved and strongly supported tree for the higher phylogeny of Neuropterida that is highly concordant with previous estimates based on DNA sequence data.
Phylogeny of the Neuropterida: a first molecular approach
TLDR
P phylogenetic analysis of the heterogeneous Neuroptera remains a challenge with respect to selection of the proper genes and mutatis mutandis the morphological approach, and the hypothesis of a sister‐group relationship Raphidioptera put forward in recent morphological analyses is supported.
The phylogeny of brown lacewings (Neuroptera: Hemerobiidae) reveals multiple reductions in wing venation
TLDR
The phylogenetic hypothesis and divergence times analysis suggest that extant hemerobiids originated around the end of the Triassic and evolved as three distinct clades that diverged from one another during the Late Jurassic to Early Cretaceous.
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