An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks.

@article{Stelzer2011AnEB,
  title={An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks.},
  author={Michael Stelzer and Jibin Sun and Tom Kamphans and S{\'a}ndor P. Fekete and An-Ping Zeng},
  journal={Integrative biology : quantitative biosciences from nano to macro},
  year={2011},
  volume={3 11},
  pages={1071-86}
}
The bioreaction database established by Ma and Zeng (Bioinformatics, 2003, 19, 270-277) for in silico reconstruction of genome-scale metabolic networks has been widely used. Based on more recent information in the reference databases KEGG LIGAND and Brenda, we upgrade the bioreaction database in this work by almost doubling the number of reactions from 3565 to 6851. Over 70% of the reactions have been manually updated/revised in terms of reversibility, reactant pairs, currency metabolites and… CONTINUE READING

Citations

Publications citing this paper.
Showing 1-10 of 10 extracted citations

References

Publications referenced by this paper.
Showing 1-5 of 5 references

SPUL: Shortest path with unique labels

T. Kamphans, M. Stelzer
C++ program, • 2008
View 10 Excerpts
Highly Influenced

A set of measures of centrality based on betweenness

L. C. Freeman
Sociometry, 1977, • 1977
View 3 Excerpts

Similar Papers

Loading similar papers…