An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments.

@article{Feltus2004AnSR,
  title={An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments.},
  author={Frank Alex Feltus and Jun Wan and Stefan R. Schulze and James Estill and Ning Jiang and Andrew H. Paterson},
  journal={Genome research},
  year={2004},
  volume={14 9},
  pages={1812-9}
}
Dense coverage of the rice genome with polymorphic DNA markers is an invaluable tool for DNA marker-assisted breeding, positional cloning, and a wide range of evolutionary studies. We have aligned drafts of two rice subspecies, indica and japonica, and analyzed levels and patterns of genetic diversity. After filtering multiple copy and low quality sequence, 408,898 candidate DNA polymorphisms (SNPs/INDELs) were discerned between the two subspecies. These filters have the consequence that our… CONTINUE READING
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