Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration

Abstract

Our objective was to identify whether rare genetic variation in amyotrophic lateral sclerosis (ALS) candidate survival genes modifies ALS survival. Candidate genes were selected based on evidence for modifying ALS survival. Each tail of the extreme 1.5% of survival was selected from the UK MND DNA Bank and all samples available underwent whole genome sequencing. A replication set from the Netherlands was used for validation. Sequences of candidate survival genes were extracted and variants passing quality control with a minor allele frequency 0.05 were selected for association testing. Analysis was by burden testing using SKAT. Candidate survival genes UNC13A, KIFAP3, and EPHA4 were tested for association in a UK sample comprising 25 short survivors and 25 long survivors. Results showed that only SNVs in UNC13A were associated with survival (p 1⁄4 6.57 10 ). SNV rs10419420:G4A was found exclusively in long survivors (3/25) and rs4808092:G4A exclusively in short survivors (4/25). These findings were not replicated in a Dutch sample. In conclusion, population specific rare variants of UNC13A may modulate survival in ALS.

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Cite this paper

@inproceedings{Gaastra2015AmyotrophicLS, title={Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration}, author={Benjamin Gaastra and Aleksey Shatunov and Sara L. Pulit and Ashley R. Jones and William Sproviero and Alexandra C. Gillett and Zhongbo Chen and Janine Kirby and Isabella Fogh and John Francis Powell and Peter Nigel Leigh and Karen E. Morrison and Pamela J Shaw and Christopher Shaw and Leonard H. van den Berg and Jan Herman Veldink and Cathryn M. Lewis and Nigel Leigh}, year={2015} }