Amplification of oak DNA from ancient and modern wood

@article{DumolinLapegue1999AmplificationOO,
  title={Amplification of oak DNA from ancient and modern wood},
  author={S. Dumolin-Lapegue and M. H. Pemonge and Ludovic Gielly and Pierre Taberlet and R{\'e}my J. Petit},
  journal={Molecular Ecology},
  year={1999},
  volume={8}
}
A polymorphic noncoding region of chloroplast DNA (cpDNA) was successfully amplified by the polymerase chain reaction (PCR) from various oak wood samples, including recent and more ancient (about 600‐years‐old) samples from different oak species. Adaptation of DNA isolation and amplification protocols was necessary to obtain this result. Polymorphisms useful to distinguish species or geographical origin of these samples could be scored through sequencing. These polymorphisms include one… Expand
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References

SHOWING 1-6 OF 6 REFERENCES
Association between chloroplast and mitochondrial lineages in oaks.
TLDR
It is concluded that paternal leakage is not a significant factor at this timescale in many populations that are polymorphic for both cpDNA and mtDNA in this area without producing any new combination of cytoplasms involving the mitochondrial substitution. Expand
Phylogeographic structure of white oaks throughout the European continent.
TLDR
The mapped distribution of the haplotypes indicates the probable routes of postglacial recolonization followed by oak populations that had persisted in southern refugia, especially in the Iberian peninsula, Italy and the Balkans. Expand
Polymorphic simple sequence repeat regions in chloroplast genomes: applications to the population genetics of pines.
TLDR
It is anticipated that SSR loci within the chloroplast genome should provide a highly informative assay for the analysis of the genetic structure of plant populations, by using a PCR-based assay. Expand
A set of universal primers for amplification of polymorphic non‐coding regions of mitochondrial and chloroplast DNA in plants
The genetic information present in the plant mitochondrial DNA (mtDNA) and chloroplast DNA (cpDNA) is of great interest in phylogeny and in population genetics, largely because of the non-mendelianExpand
Chloroplast DNA footprints of postglacial recolonization by oaks.
TLDR
Local systematic interspecific sharing of the maternal genome strongly suggests that long-distance seed dispersal events followed by interspecific exchanges were involved at the time of colonization, about 10,000 years ago. Expand
Relationship Between Geographical Origin and Chemical Composition of Wood for Oak Barrels
Eight oak wood samples from the U.S., together with 39 samples coming from six different French regions, have been classified according to geographical origin. Extracts of the wood samples have beenExpand