Alignments without low-scoring regions

@article{Zhang1998AlignmentsWL,
  title={Alignments without low-scoring regions},
  author={Zheng Zhang and Piotr Berman and Webb Miller},
  journal={Journal of computational biology : a journal of computational molecular cell biology},
  year={1998},
  volume={5 2},
  pages={197-210}
}
Given a strong match between regions of two sequences, how far can the match be meaningfully extended if gaps are allowed in the resulting alignment? The aim is to avoid searching beyond the point that a useful extension of the alignment is likely to be found. Without loss of generality, we can restrict attention to the suffixes of the sequences that follow the strong match, which leads to the following formal problem. Given two sequences and a fixed X > 0, align initial portions of the… CONTINUE READING

From This Paper

Figures, tables, results, connections, and topics extracted from this paper.
36 Extracted Citations
0 Extracted References
Similar Papers

Citing Papers

Publications influenced by this paper.
Showing 1-10 of 36 extracted citations

Similar Papers

Loading similar papers…