Algebraic double cut and join

@article{Bhatia2015AlgebraicDC,
  title={Algebraic double cut and join},
  author={Sangeeta Bhatia and Attila Egri-Nagy and Andrew R. Francis},
  journal={Journal of Mathematical Biology},
  year={2015},
  volume={71},
  pages={1149-1178}
}
Establishing a distance between genomes is a significant problem in computational genomics, because its solution can be used to establish evolutionary relationships including phylogeny. The “double cut and join” (DCJ) model of chromosomal rearrangement proposed by Yancopoulos et al. (Bioinformatics 21:3340–3346, 2005) has received attention as it can model inversions, translocations, fusion and fission on a multichromosomal genome that may contain both linear and circular chromosomes. In this… 

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