ATRIPPI: An Atom-residue Preference Scoring Function for Protein-protein Interactions

@inproceedings{Liu2009ATRIPPIAA,
  title={ATRIPPI: An Atom-residue Preference Scoring Function for Protein-protein Interactions},
  author={Kang-Ping Liu and Lu-Shian Chang and Jinn-Moon Yang},
  booktitle={BIBE},
  year={2009}
}
We present an ATRIPPI model for analyzing protein-protein interactions. This model is a 167-atom-type and residue-specific interaction preferences with distance bins derived from 641 co-crystallized protein-protein interfaces. The ATRIPPI model is able to yield physical meanings of hydrogen bonding, disulfide bonding, electrostatic interactions, van der Waals and aromatic-aromatic interactions. We applied this model to identify the native states and near-native complex structures on 17 bound… CONTINUE READING