A35 Viral evolution and innate immune responses during acute HIV-1 infection and their association with disease pathogenesis

Abstract

formatics pipeline to identify and classify all known viruses present in a metagenomic sample. Viral NGS reads are identified using a protein-based alignment method, DIAMOND, which is substantially faster than the standard BLAST method, and more reliable for viruses. These reads are automatically assembled into contigs using SPAdes, a de novo assembler. The… (More)
DOI: 10.1093/ve/vew036.034

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@inproceedings{Hassan2017A35VE, title={A35 Viral evolution and innate immune responses during acute HIV-1 infection and their association with disease pathogenesis}, author={A. S. Hassan and John D. Hare and G. Kamini and L M Yindom and Anatoli Kamali and Etiene Karita and W. Kilemba and M. A. Price and Persephone Borrow and Pamela J. Bjorkman and J. Albert and Potiano Kaleebu and Stuart M Allan and Patricia E. Fast and Eric Hunter and J E M Gilmour and Thumbi Ndung’u and Sarah L Rowland-Jones and E. J. Sanders and Joakim Esbjornsson}, booktitle={Virus evolution}, year={2017} }