A whole-genome phylogeny of the family Pasteurellaceae.

  title={A whole-genome phylogeny of the family Pasteurellaceae.},
  author={Maria Pia Di Bonaventura and Ernest K. Lee and Robert DeSalle and Paul J. Planet},
  journal={Molecular phylogenetics and evolution},
  volume={54 3},
A phylogenomic approach was used to generate an amino acid phylogeny for 12 whole genomes representing 10 species in the family Pasteurellaceae. Orthology of genes was determined using an approach similar to OrthologID (http://nypg.bio.nyu.edu/orthologid/about.html) and resulted in the generation of a matrix with 3130 genes with 1,194,615 aligned amino acid characters of which 239,504 characters are phylogenetically informative. Phylogenetic analysis of the concatenated matrix using all… CONTINUE READING

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