A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals

  title={A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals},
  author={Jieming Chen and Joel S. Rozowsky and Timur Galeev and Arif Harmanci and Robert R Kitchen and Jason Bedford and Alexej Abyzov and Yong Kong and Lynne J Regan and Mark B Gerstein},
  booktitle={Nature communications},
Large-scale sequencing in the 1000 Genomes Project has revealed multitudes of single nucleotide variants (SNVs). Here, we provide insights into the functional effect of these variants using allele-specific behaviour. This can be assessed for an individual by mapping ChIP-seq and RNA-seq reads to a personal genome, and then measuring 'allelic imbalances' between the numbers of reads mapped to the paternal and maternal chromosomes. We annotate variants associated with allele-specific binding and… CONTINUE READING
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