A study on protein sequence alignment quality.

@article{Elofsson2002ASO,
  title={A study on protein sequence alignment quality.},
  author={Arne Elofsson},
  journal={Proteins},
  year={2002},
  volume={46 3},
  pages={
          330-9
        }
}
One of the most central methods in bioinformatics is the alignment of two protein or DNA sequences. However, so far large-scale benchmarks examining the quality of these alignments are scarce. On the other hand, recently several large-scale studies of the capacity of different methods to identify related sequences has led to new insights about the performance of fold recognition methods. To increase our understanding about fold recognition methods, we present a large-scale benchmark of… CONTINUE READING

Topics from this paper.

Citations

Publications citing this paper.
SHOWING 1-10 OF 39 CITATIONS

A comparison of different functions for predicted protein model quality assessment

  • Journal of Computer-Aided Molecular Design
  • 2016
VIEW 8 EXCERPTS
CITES BACKGROUND
HIGHLY INFLUENCED

Probabilistic protein homology modeling

VIEW 4 EXCERPTS
CITES RESULTS
HIGHLY INFLUENCED

A SURVEY ON MINING METHODS FOR PROTEIN SEQUENCE ANALYSIS: AN AERIAL VIEW

VIEW 6 EXCERPTS
CITES METHODS, RESULTS & BACKGROUND
HIGHLY INFLUENCED

A deep phylogeny of viral and cellular right-hand polymerases.

  • Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases
  • 2015
VIEW 3 EXCERPTS
CITES BACKGROUND