A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

@article{Parks2018ASB,
  title={A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life},
  author={Donovan H. Parks and Maria Chuvochina and D. Waite and Christian Rinke and Adam Skarshewski and P. Chaumeil and P. Hugenholtz},
  journal={Nature Biotechnology},
  year={2018},
  volume={36},
  pages={996-1004}
}
  • Donovan H. Parks, Maria Chuvochina, +4 authors P. Hugenholtz
  • Published 2018
  • Medicine, Biology
  • Nature Biotechnology
  • Taxonomy is an organizing principle of biology and is ideally based on evolutionary relationships among organisms. [...] Key Method We used a concatenated protein phylogeny as the basis for a bacterial taxonomy that conservatively removes polyphyletic groups and normalizes taxonomic ranks on the basis of relative evolutionary divergence. Under this approach, 58% of the 94,759 genomes comprising the Genome Taxonomy Database had changes to their existing taxonomy. This result includes the description of 99 phyla…Expand Abstract

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