A protein-protein docking benchmark.

@article{Chen2003APD,
  title={A protein-protein docking benchmark.},
  author={Ruolan Chen and Julian Mintseris and J. M. Janin and Zhiping Weng},
  journal={Proteins},
  year={2003},
  volume={52 1},
  pages={
          88-91
        }
}
We have developed a nonredundant benchmark for testing protein-protein docking algorithms. Currently it contains 59 test cases: 22 enzyme-inhibitor complexes, 19 antibody-antigen complexes, 11 other complexes, and 7 difficult test cases. Thirty-one of the test cases, for which the unbound structures of both the receptor and ligand are available, are classified as follows: 16 enzyme-inhibitor, 5 antibody-antigen, 5 others, and 5 difficult. Such a centralized resource should benefit the docking… CONTINUE READING

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