A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales)

@article{OrtizSantana2013APO,
  title={A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales)},
  author={Beatriz Ortiz-Santana and Daniel L. Lindner and Otto Miettinen and Alfredo Justo and David S. Hibbett},
  journal={Mycologia},
  year={2013},
  volume={105},
  pages={1391 - 1411}
}
Key MethodPhylogenetic relationships among members of the antrodia clade were investigated with molecular data from two nuclear ribosomal DNA regions, LSU and ITS. A total of 123 species representing 26 genera producing a brown rot were included in the present study. Three DNA datasets (combined LSU-ITS dataset, LSU dataset, ITS dataset) comprising sequences of 449 isolates were evaluated with three different phylogenetic analyses (maximum likelihood, maximum parsimony, Bayesian inference). We present a…
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References

SHOWING 1-10 OF 185 REFERENCES
Phylogenetic relationships of Antrodia species and related taxa based on analyses of nuclear large subunit ribosomal DNA sequences.
TLDR
The generic status of Fibroporia, but not Amyloporia, was supported in this study, indicating that Antrodia is not a monophyletic group.
Phylogenetic analysis of Antrodia and related taxa based on partial mitochondrial SSU rDNA sequences
TLDR
Sequences of mitochondrial SSU rDNA were obtained from six species of Antrodia and related fungal taxa to reveal their phylogenetic relationships, indicating thatAntrodia is a heterogeneous genus and that brown rot fungi have evolved convergently.
Phylogenetic analysis of Antrodia species and Antrodia camphorata inferred from internal transcribed spacer region
  • H. Chiu
  • Biology
    Antonie van Leeuwenhoek
  • 2006
TLDR
Polymorphisms arising within the ITS1-5.8S-ITS2 region can provide practical markers for establishing a foundation for the further expansion of an ITS sequence database of medically important fungi.
The phylogenetic distribution of resupinate forms across the major clades of mushroom‐forming fungi (Homobasidiomycetes)
TLDR
Phylogenetic relationships of resupinate Homobasidiomycetes (Corticiaceae s. lat. and others) were studied using ribosomal DNA sequences from a broad sample of res upinate and nonresupinate taxa to support monophyly of the eight major clades of Homob as well as independent lineages corresponding to the Gloeophyllum clade, corticioid clade and Jaapia argillacea.
Progress toward a phylogenetic classification of the Polyporaceae through parsimony analysis of mitochondrial ribosomal DNA sequences
TLDR
Seven groups of species are generally well supported (as measured by bootstrapping) or are congruent with previous taxonomic hypotheses, and Parsimony analyses of these sequences suggest that the Polyporaceae are polyphyletic.
The phylogenetic disposition of Antrodia s.l. (Polyporales, Basidiomycota) from Patagonia, Argentina
TLDR
Phylogenetic trees generated from maximum-parsimony, neighbour-joining and Bayesian-inference analyses showed that the Argentinean collections were distributed inside the following three main clades; ‘Amyloporia’ and ‘Antrodia clades’ did not have strong molecular support; however, they were well defined with a polyphasic approach.
Higher-level phylogenetic relationships of Homobasidiomycetes (mushroom-forming fungi) inferred from four rDNA regions.
TLDR
Parsimony and maximum-likelihood analyses support the monophyly of the eight major clades recognized by Hibbett and Thorn, and most groups are strongly supported in bootstrapped parsimony analyses, but the polyporoid clade remains weakly supported.
Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five–marker dataset
TLDR
The use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenClatural combinations would be necessary, and the classification of additional species based on morphological characters alone will still be possible.
High phylogenetic diversity among corticioid homobasidiomycetes.
TLDR
It is concluded that corticioid fungi hold a considerable share of the phylogenetic diversity displayed by homobasidiomycetes, and should always be considered when phylogenetic studies of larger basidiomyCetes are designed.
The phylogenetic position of Postia s.l. (Polyporales, Basidiomycota) from Patagonia, Argentina
TLDR
It is found that a separation between specimens of Postia pelliculosa and Ryvardenia cretacea from either side of the Pacific suggests they could be considered different at the species level from a phylogenetic point of view.
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