A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales)
@article{OrtizSantana2013APO, title={A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales)}, author={Beatriz Ortiz-Santana and Daniel L. Lindner and Otto Miettinen and Alfredo Justo and David S. Hibbett}, journal={Mycologia}, year={2013}, volume={105}, pages={1391 - 1411} }
Key MethodPhylogenetic relationships among members of the antrodia clade were investigated with molecular data from two nuclear ribosomal DNA regions, LSU and ITS. A total of 123 species representing 26 genera producing a brown rot were included in the present study. Three DNA datasets (combined LSU-ITS dataset, LSU dataset, ITS dataset) comprising sequences of 449 isolates were evaluated with three different phylogenetic analyses (maximum likelihood, maximum parsimony, Bayesian inference). We present a…
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References
SHOWING 1-10 OF 186 REFERENCES
Phylogenetic relationships of Antrodia species and related taxa based on analyses of nuclear large subunit ribosomal DNA sequences.
- Biology
- 2010
The generic status of Fibroporia, but not Amyloporia, was supported in this study, indicating that Antrodia is not a monophyletic group.
Phylogenetic analysis of Antrodia and related taxa based on partial mitochondrial SSU rDNA sequences
- Biology, MedicineAntonie van Leeuwenhoek
- 2004
Sequences of mitochondrial SSU rDNA were obtained from six species of Antrodia and related fungal taxa to reveal their phylogenetic relationships, indicating thatAntrodia is a heterogeneous genus and that brown rot fungi have evolved convergently.
Phylogenetic analysis of Antrodia species and Antrodia camphorata inferred from internal transcribed spacer region
- BiologyAntonie van Leeuwenhoek
- 2006
Polymorphisms arising within the ITS1-5.8S-ITS2 region can provide practical markers for establishing a foundation for the further expansion of an ITS sequence database of medically important fungi.
The phylogenetic distribution of resupinate forms across the major clades of mushroom‐forming fungi (Homobasidiomycetes)
- Biology
- 2005
Phylogenetic relationships of resupinate Homobasidiomycetes (Corticiaceae s. lat. and others) were studied using ribosomal DNA sequences from a broad sample of res upinate and nonresupinate taxa to support monophyly of the eight major clades of Homob as well as independent lineages corresponding to the Gloeophyllum clade, corticioid clade and Jaapia argillacea.
Progress toward a phylogenetic classification of the Polyporaceae through parsimony analysis of mitochondrial ribosomal DNA sequences
- Biology
- 1995
Seven groups of species are generally well supported (as measured by bootstrapping) or are congruent with previous taxonomic hypotheses, and Parsimony analyses of these sequences suggest that the Polyporaceae are polyphyletic.
The phylogenetic disposition of Antrodia s.l. (Polyporales, Basidiomycota) from Patagonia, Argentina
- Biology
- 2011
Phylogenetic trees generated from maximum-parsimony, neighbour-joining and Bayesian-inference analyses showed that the Argentinean collections were distributed inside the following three main clades; ‘Amyloporia’ and ‘Antrodia clades’ did not have strong molecular support; however, they were well defined with a polyphasic approach.
Phylogenetic classification of Antrodia and related genera based on ribosomal RNA internal transcribed spacer sequences
- Biology
- 2001
The results showed that Antrodia species causing a brown rot in wood did not form a monophyletic clade and were separated into three distinct groups, indicating the phylogenetic importance of the rot type in the classification of the Polyporaceae.
Higher-level phylogenetic relationships of Homobasidiomycetes (mushroom-forming fungi) inferred from four rDNA regions.
- BiologyMolecular phylogenetics and evolution
- 2002
Parsimony and maximum-likelihood analyses support the monophyly of the eight major clades recognized by Hibbett and Thorn, and most groups are strongly supported in bootstrapped parsimony analyses, but the polyporoid clade remains weakly supported.
Phylogenetic Relationships of the Polyporaceae Based on Gene Sequences of Nuclear Small Subunit Ribosomal RNAs
- Biology
- 2001
To classify the Polyporaceae into more natural groups, phylogenetic analyses were performed using nuclear small subunit ribosomal DNA sequences and seven phylogenetically meaningful groups were identified and discussed.
Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five–marker dataset
- Biology
- 2011
The use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenClatural combinations would be necessary, and the classification of additional species based on morphological characters alone will still be possible.