A high-throughput apple SNP genotyping platform using the GoldenGate™ assay.

  title={A high-throughput apple SNP genotyping platform using the GoldenGate™ assay.},
  author={Muhammad Awais Khan and Yuepeng Han and Youfu Zhao and Schuyler S. Korban},
  volume={494 2},
EST data generated from 14 apple genotypes were downloaded from NCBI and mapped against a reference EST assembly to identify Single Nucleotide Polymorphisms (SNPs). Mapping of these SNPs was undertaken using 90% of sequence similarity and minimum coverage of four reads at each SNP position. In total, 37,807 SNPs were identified with an average of one SNP every 187 bp from a total of 6888 unique EST contigs. Identified SNPs were checked for flanking sequences of ≥ 60 bp along both sides of SNP… CONTINUE READING
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Publications referenced by this paper.
Showing 1-10 of 40 references

Development of a set of SNP markers present in expressed genes of the apple

  • D Chagné
  • Genomics
  • 2008
Highly Influential
10 Excerpts

Novel possibilities for marker-assisted breeding exploiting the apple genome

  • F Costa
  • Acta Hortic
  • 2010

Strategies for map-based cloning in apple

  • Y. Han, S. S. Korban
  • Crit. Rev. Plant Sci
  • 2010
1 Excerpt

The geneticmap of Artemisia annua L . identi fi es loci affecting yield of the antimalarial drug artemisinin

  • I. A. Graham
  • Science
  • 2010

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