A high-throughput apple SNP genotyping platform using the GoldenGate™ assay.

@article{Khan2012AHA,
  title={A high-throughput apple SNP genotyping platform using the GoldenGate™ assay.},
  author={Muhammad Awais Khan and Yuepeng Han and Youfu Zhao and Schuyler S. Korban},
  journal={Gene},
  year={2012},
  volume={494 2},
  pages={196-201}
}
EST data generated from 14 apple genotypes were downloaded from NCBI and mapped against a reference EST assembly to identify Single Nucleotide Polymorphisms (SNPs). Mapping of these SNPs was undertaken using 90% of sequence similarity and minimum coverage of four reads at each SNP position. In total, 37,807 SNPs were identified with an average of one SNP every 187 bp from a total of 6888 unique EST contigs. Identified SNPs were checked for flanking sequences of ≥ 60 bp along both sides of SNP… CONTINUE READING
Highly Cited
This paper has 114 citations. REVIEW CITATIONS

Citations

Publications citing this paper.
Showing 1-10 of 11 extracted citations

115 Citations

0204060'13'15'17
Citations per Year
Semantic Scholar estimates that this publication has 115 citations based on the available data.

See our FAQ for additional information.

References

Publications referenced by this paper.
Showing 1-10 of 40 references

Development of a set of SNP markers present in expressed genes of the apple

  • D Chagné
  • Genomics
  • 2008
Highly Influential
10 Excerpts

Novel possibilities for marker-assisted breeding exploiting the apple genome

  • F Costa
  • Acta Hortic
  • 2010

Strategies for map-based cloning in apple

  • Y. Han, S. S. Korban
  • Crit. Rev. Plant Sci
  • 2010
1 Excerpt

The geneticmap of Artemisia annua L . identi fi es loci affecting yield of the antimalarial drug artemisinin

  • I. A. Graham
  • Science
  • 2010

Similar Papers

Loading similar papers…