A genotype calling algorithm for affymetrix SNP arrays

@article{Rabbee2006AGC,
  title={A genotype calling algorithm for affymetrix SNP arrays},
  author={Nusrat Rabbee and Terence P. Speed},
  journal={Bioinformatics},
  year={2006},
  volume={22 1},
  pages={
          7-12
        }
}
MOTIVATION A classification algorithm, based on a multi-chip, multi-SNP approach is proposed for Affymetrix SNP arrays. Current procedures for calling genotypes on SNP arrays process all the features associated with one chip and one SNP at a time. Using a large training sample where the genotype labels are known, we develop a supervised learning algorithm to obtain more accurate classification results on new data. The method we propose, RLMM, is based on a robustly fitted, linear model and uses… CONTINUE READING

Citations

Publications citing this paper.
SHOWING 1-10 OF 208 CITATIONS, ESTIMATED 55% COVERAGE

387 Citations

0204060'08'11'14'17
Citations per Year
Semantic Scholar estimates that this publication has 387 citations based on the available data.

See our FAQ for additional information.

References

Publications referenced by this paper.
SHOWING 1-5 OF 5 REFERENCES

A comparison of normalization methods for high

  • Bolstad, B.M
  • 2003

Exploration, normalization, and summaries of high hensity

  • Irizarry, R.A
  • 2003

Similar Papers

Loading similar papers…