A comparison of RNA-seq and exon arrays for whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat

@inproceedings{Perkins2014ACO,
  title={A comparison of RNA-seq and exon arrays for whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat},
  author={James Richard Perkins and Ana Antunes-Martins and Margarita Calvo and Celine Dauvergne John Grist and Werner Rust and R. Schmid and Tobias Hildebrandt and Matthias Kohl and Christine A. Orengo and Stephen B. McMahon and David L Bennett},
  booktitle={Molecular pain},
  year={2014}
}
BACKGROUND The past decade has seen an abundance of transcriptional profiling studies of preclinical models of persistent pain, predominantly employing microarray technology. In this study we directly compare exon microarrays to RNA-seq and investigate the ability of both platforms to detect differentially expressed genes following nerve injury using the L5 spinal nerve transection model of neuropathic pain. We also investigate the effects of increasing RNA-seq sequencing depth. Finally we take… CONTINUE READING
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