A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi

@article{Perkins2009ASR,
  title={A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi},
  author={T. Perkins and R. Kingsley and M. Fookes and P. Gardner and K. James and Lu Yu and S. Assefa and M. He and N. Croucher and D. Pickard and D. Maskell and J. Parkhill and J. Choudhary and N. Thomson and G. Dougan},
  journal={PLoS Genetics},
  year={2009},
  volume={5}
}
High-density, strand-specific cDNA sequencing (ssRNA–seq) was used to analyze the transcriptome of Salmonella enterica serovar Typhi (S. Typhi). By mapping sequence data to the entire S. Typhi genome, we analyzed the transcriptome in a strand-specific manner and further defined transcribed regions encoded within prophages, pseudogenes, previously un-annotated, and 3′- or 5′-untranslated regions (UTR). An additional 40 novel candidate non-coding RNAs were identified beyond those previously… Expand
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