A Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis.

  title={A Scalable Open-Source Pipeline for Large-Scale Root Phenotyping of Arabidopsis.},
  author={Radka Slovak and Christian G{\"o}schl and Xiaoxue Su and Koji Shimotani and Takashi Shiina and Wolfgang Busch},
  journal={The Plant cell},
  volume={26 6},
Large-scale phenotyping of multicellular organisms is one of the current challenges in biology. We present a comprehensive and scalable pipeline that allows for the efficient phenotyping of root growth traits on a large scale. This includes a high-resolution, low-cost acquisition setup as well as the automated image processing software BRAT. We assess the performance of this pipeline in Arabidopsis thaliana under multiple growth conditions and show its utility by performing genome-wide… CONTINUE READING
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