A Review of Molecular Phylogenetic Studies of Rubiaceae1

@inproceedings{Bremer2009ARO,
  title={A Review of Molecular Phylogenetic Studies of Rubiaceae1},
  author={Birgitta Bremer},
  year={2009}
}
Abstract Rubiaceae is one of the five largest families of flowering plants with over 13,000 species. We have seen a tremendous increase in our understanding of the phylogeny of the family through studies on molecular data during the 15-year period from 1991 to 2005; some new relationships are completely unexpected and different from traditional classification. At the end of 2005, ca. 50 phylogenetic reconstructions from the family had been published based on more than 4400 sequences. Most… Expand
Molecular phylogenetic analysis of the tribe Alberteae (Rubiaceae), with description of a new genus, Razafimandimbisonia
TLDR
The genus Alberta is found to be paraphyletic as presently circumscribed and the new genus Razafimandimbisonia Kainul is proposed by C. & B. Bremer to accommodate the Malagasy species. Expand
Chloroplast genomes of Rubiaceae: Comparative genomics and molecular phylogeny in subfamily Ixoroideae
TLDR
The main objectives of this study are to gain insight in chloroplast genome evolution in the Rubiaceae (Ixoroideae) through efficient methodology for de novo assembly of plastid genomes; and to test the efficiency of mining SNPs in the nuclear genome of Ixoroidae based on the use of a coffee reference genome to produce well-supported nuclear trees. Expand
Molecular phylogeny of Galium L. of the tribe Rubieae (Rubiaceae) - Emphasis on Chinese species and recognition of a new genus Pseudogalium.
TLDR
The number of samples examined from eastern Asia was greatly increased, representing the most comprehensive sampling of Galium to date, and it was confirmed that Galium is non-monophyletic, as are most of its sections. Expand
Molecular systematics and morphological character evolution of the Condamineeae (Rubiaceae).
TLDR
Morphological ancestral state reconstructions indicate that protogyny have evolved at least two times within the Condamineeae and that indehiscent fruits, loculicidal fruit dehiscence, and intrapetiolar stipules have evolved independently several times. Expand
Phylogenetic structure and clade circumscriptions in the Gardenieae complex (Rubiaceae)
TLDR
The phylogeny of this large and diverse Rubiaceae-Gardenieae and closely related tribes Bertiereae, Coffeeae, Cremasporeae, Octotropideae, and Pavetteae is reconstructed using an extensive sampling of 108 genera and five plastid DNA regions. Expand
Historical biogeography of the coffee family (Rubiaceae, Gentianales) in Madagascar: case studies from the tribes Knoxieae, Naucleeae, Paederieae and Vanguerieae
TLDR
The presence of monophyletic groups that include a number of species only found in Madagascar indicates that much endemism in the tribes results from speciation events occurring well after their arrival in Madagascar. Expand
中国被子植物科属概览: 依据APG III系统
TLDR
This study investigates circumscriptions of families and genera of native and introduced angiosperms in China according to the APG III classification system and recent phylogenetic studies and found that there are 258 native and 55 introduced families, and 2,872 introduced genera in China. Expand
Four new endemic genera of Rubiaceae (Pavetteae) from Madagascar represent multiple radiations into drylands
TLDR
The description of the four new genera shows that the tribe Pavetteae exhibits the same pattern as many plant groups in Madagascar, which are characterised by a high proportion of endemic genera comprising a single or a few species. Expand
Molecular phylogeny and taxonomic revision of the Philippine endemic Villaria Rolfe (Rubiaceae)
TLDR
Parsimony and Bayesian analyses of the combined plastid dataset strongly support the inclusion of Villaria in Octotropideae as well as monophyly of the genus, but the molecular results do not conform to the current informal groups of the tribe delimited by fruit size, ovule position, number of seeds and exotesta thickenings. Expand
Conflicting phylogenetic signals in genomic data of the coffee family (Rubiaceae)
TLDR
This work contributes new data from complete 58 plastid genome sequences, representing 55 of the currently 65 recognized tribes of the Rubiaceae, and identifies conflicting phylogenetic signals in the data. Expand
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References

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TLDR
The non-Loganiaceae taxa Cinchona (Rubiaceae), Nerium (Apocynaceae), and Exacum (Gentianaceae) were all found to have their closest relatives within the Loganiaceae indicating that the loganiaceae are paraphyletic and ought to be reclassified. Expand
Phylogeny and classification of the subfamily Rubioideae (Rubiaceae)
TLDR
P phylogenetic analyses of the subfamily Rubioideae (Rubiaceae) based on three different pieces of chloroplast DNA, the protein coding rbcL gene, the spacer sequence betweenatpB andrbcL, and the recently published rps16 intron data are performed. Expand
Phylogeny ofRubiaceae-Rubieae inferred from the sequence of a cpDNA intergene region
TLDR
A phylogenetic analysis of 25 species, representing eight genera of theRubieae tribe (Rubiaceae), has been made using the DNA sequence of the chloroplastatp B-rbc L intergene region, finding five groups are clearly separated and described as informal clades. Expand
Paraphyly of Paederieae, recognition of Putorieae and expansion of Plocama (Rubiaceae-Rubioideae)
TLDR
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Searching for the relatives of Coffea (Rubiaceae, Ixoroideae): the circumscription and phylogeny of Coffeeae based on plastid sequence data and morphology.
TLDR
The circumscription of Coffeeae (Rubiaceae) and phylogenetic relationships within the tribe were evaluated using sequence data from four plastid regions and a morphological data set and support an enlarged circumscription for Coffeeae, containing 11 genera. Expand
A phylogeny of Urophylleae (Rubiaceae) based on rps16 intron data
TLDR
Using sequence data from the rps16 intron to address the question where the four genera Temnopteryx, Pentaloncha, Pleiocarpidia, and Poecilocalyx belong, it is shown that there is conflict regarding the resolution among lineages in Rubioideae, which partly affects the support for relationships within Urophylleae. Expand
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TLDR
The study supports the monophyly of the subtribes Anthocephalidae, Mitragynae, Uncariae all sensu Haviland and Naucleinae sensu Ridsdale and results were inconclusive for assessing the relationships among Adina, Adinauclea, Metadina, and Pertusadina. Expand
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TLDR
The investigation of molecular data neither supports the phylogeny of Andersson nor the classification of Robbrecht, but instead indicates totally new relationships ofIsertieae, Mussaendeae, andSabiceeae. Expand
Phylogeny of the Rubiaceae (Chiococceae) based on molecular and morphological data-useful approaches for classification and comparative ecology
TLDR
The tribe Chiococceae is amended to include members of the former Condamineeae (subtribe Portlandiinae) and the genera Exostema and Coutarea (formerly in the Cinchoneae) to support a large, previously unrecognized monophyletic group. Expand
Phylogenetic utility of the nuclear rDNA ITS region in subfamilyIxoroideae (Rubiaceae): Comparisons with cpDNArbcL sequence data
TLDR
ITS of the nrDNA were sequenced for 21 taxa inIxoroideae and outgroups (Rubiaceae) and compared with sequences of the cp-generbcL and inconsistencies found may be caused by density of taxon sampling, different evolutionary rates, phylogenetic sorting, homoplasy caused by functional constraints, or sampling of non-orthologous ITS types. Expand
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