A Rank-Based Sequence Aligner with Applications in Phylogenetic Analysis

@inproceedings{Dinu2014ARS,
  title={A Rank-Based Sequence Aligner with Applications in Phylogenetic Analysis},
  author={Liviu P. Dinu and Radu Tudor Ionescu and Alexandru I. Tomescu},
  booktitle={PloS one},
  year={2014}
}
Recent tools for aligning short DNA reads have been designed to optimize the trade-off between correctness and speed. This paper introduces a method for assigning a set of short DNA reads to a reference genome, under Local Rank Distance (LRD). The rank-based aligner proposed in this work aims to improve correctness over speed. However, some indexing… CONTINUE READING

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