A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences

@article{Steinbiss2012ANE,
  title={A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences},
  author={Sascha Steinbiss and Stefan Kurtz},
  journal={IEEE/ACM Transactions on Computational Biology and Bioinformatics},
  year={2012},
  volume={9},
  pages={345-357}
}
Today's genome analysis applications require sequence representations allowing for fast access to their contents while also being memory-efficient enough to facilitate analyses of large-scale data. While a wide variety of sequence representations exist, lack of a generic implementation of efficient sequence storage has led to a plethora of poorly reusable or programming language-specific implementations. We present a novel, space-efficient data structure (GtEncseq) for storing multiple… CONTINUE READING
9 Extracted Citations
5 Extracted References
Similar Papers

Citing Papers

Publications influenced by this paper.

Similar Papers

Loading similar papers…