A Dataset Generator for Whole Genome Shotgun Sequencing

@article{Myers1999ADG,
  title={A Dataset Generator for Whole Genome Shotgun Sequencing},
  author={Eugene W. Myers},
  journal={Proceedings. International Conference on Intelligent Systems for Molecular Biology},
  year={1999},
  pages={
          202-10
        }
}
Simulated data sets have been found to be useful in developing software systems because (1) they allow one to study the effect of a particular phenomenon in isolation, and (2) one has complete information about the true solution against which to measure the results of the software. In developing a software suite for assembling a whole human genome shotgun data set, we have developed a simulator, celsim, that permits one to describe and stochastically generate a target DNA sequence with a… CONTINUE READING

Citations

Publications citing this paper.
SHOWING 1-10 OF 45 CITATIONS

References

Publications referenced by this paper.
SHOWING 1-4 OF 4 REFERENCES

Shotgun sequencing

  • M.D, G. G Sutton, A. R. Kerlavage, H. O. Smith, M. Hunkapiller
  • 1998

Similar Papers

Loading similar papers…