3D-partner: a web server to infer interacting partners and binding models

  title={3D-partner: a web server to infer interacting partners and binding models},
  author={Yung-Chiang Chen and Yu-Shu Lo and Wen-Chang Hsu and Jinn-Moon Yang},
  booktitle={Nucleic acids research},
The 3D-partner is a web tool to predict interacting partners and binding models of a query protein sequence through structure complexes and a new scoring function. 3D-partner first utilizes IMPALA to identify homologous structures (templates) of a query from a heterodimer profile library. The interacting-partner sequence profiles of these templates are then used to search interacting candidates of the query from protein sequence databases (e.g. SwissProt) by PSI-BLAST. We developed a new… CONTINUE READING
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