3D-footprint: a database for the structural analysis of protein–DNA complexes

@inproceedings{ContrerasMoreira20103DfootprintAD,
  title={3D-footprint: a database for the structural analysis of protein–DNA complexes},
  author={Bruno Contreras-Moreira},
  booktitle={Nucleic Acids Research},
  year={2010}
}
3D-footprint is a living database, updated and curated on a weekly basis, which provides estimates of binding specificity for all protein-DNA complexes available at the Protein Data Bank. The web interface allows the user to: (i) browse DNA-binding proteins by keyword; (ii) find proteins that recognize a similar DNA motif and (iii) BLAST similar DNA-binding proteins, highlighting interface residues in the resulting alignments. Each complex in the database is dissected to draw interface graphs… CONTINUE READING