1001 Optimal PDB Structure Alignments: Integer Programming Methods for Finding the Maximum Contact Map Overlap

Abstract

Protein structure comparison is a fundamental problem for structural genomics, with applications to drug design, fold prediction, protein clustering, and evolutionary studies. Despite its importance, there are very few rigorous methods and widely accepted similarity measures known for this problem. In this paper we describe the last few years of… (More)
DOI: 10.1089/106652704773416876

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@article{Caprara20041001OP, title={1001 Optimal PDB Structure Alignments: Integer Programming Methods for Finding the Maximum Contact Map Overlap}, author={Alberto Caprara and Robert D. Carr and Sorin Istrail and Giuseppe Lancia and Brian Walenz}, journal={Journal of computational biology : a journal of computational molecular cell biology}, year={2004}, volume={11 1}, pages={27-52} }