"886-84-like" tick-borne encephalitis virus strains: Intraspecific status elucidated by comparative genomics.

@article{Adelshin201988684likeTE,
  title={"886-84-like" tick-borne encephalitis virus strains: Intraspecific status elucidated by comparative genomics.},
  author={Renat V. Adelshin and Elena A. Sidorova and Artem N. Bondaryuk and A. G. Trukhina and Dmitry Sherbakov and Richard Allen White Iii and Evgeny I. Andaev and S. V. Balakhonov},
  journal={Ticks and tick-borne diseases},
  year={2019}
}
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17 Citations
Background Citations
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Results Citations
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17 Citations

Delimitation of the Tick-Borne Flaviviruses. Resolving the Tick-Borne Encephalitis and Louping-Ill Virus Paraphyletic Taxa

This study aimed to apply different bioinformatic approaches to analyze all available complete genome amino acid sequences to delineate TBFV members at the species level and showed that the European subtype of TBEV (TBEV-E) is a distinct species unit and LIV, in turn, should be separated into two species.

Delimitation of the Tick-Borne Flaviviruses. Resolving the Tick-Borne Encephalitis virus and Louping-Ill Virus Paraphyletic Taxa.

High-throughput sequencing of two European strains of tick-borne encephalitis virus (TBEV), Hochosterwitz and 1993/783.

Reporting of New tick-borne encephalitis virus strains isolated in Eastern Siberia (Russia) in 1960-2011 and explaining them in an evolutionary context using Bayesian phylogenetic inference.

Rescue and in vitro characterization of a divergent TBEV-Eu strain from the Netherlands

The current study serves as the first in vitro characterization of the novel, divergent TBEV-Eu strain Salland, which infected primary human monocyte-derived dendritic cells to a similar extent and interacted with the type I interferon system in a similar manner.

Evolutionary traits of Tick-borne encephalitis virus: Pervasive non-coding RNA structure conservation and molecular epidemiology

An updated phylogeny of TBEV is provided, building on more than 220 publicly available complete genomes, and the molecular epidemiology and phylodynamics are investigated with Nextstrain, a web-based visualization framework for real-time pathogen evolution.

[Biological properties and phylogenetic relationships of tick-borne encephalitis virus (Flaviviridae, Flavivirus) isolates of siberian subtype isolated in the south of East siberia in modern period].

The phylogenetic analysis has shown that TBEV of siberian subtype that circulates in natural foci of the studied territory belong to two genetic lines, «Vasilchenko» and «Zausaev» with a strong predominance of the first.

Phylogenetic Analysis of European Subtype Strains of Tick-Borne Encephalitis Virus Isolated in the Territory of Siberia (Russia)

TBEV-Eur was recently transmitted to the territory of Siberia, according to the obtained tree topology, divergence time estimates, and the results of phylogeographic analysis.

TBEV Subtyping in Terms of Genetic Distance

The nucleotide/amino-acid space of all known TBEV sequences was analyzed and Amino-acid sequence p-distances could not reliably distinguish T BEV subtypes.

Phylogenetic Analysis of European Subtype Strains of Tick-Borne Encephalitis Virus Isolated in the Territory of Siberia (Russia)

Based on the obtained tree topology, divergence time estimates, and the results of phylogeographic analysis, it is concluded that TBEV-Eur was recently transmitted to the territory of Siberia.

References

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