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- Gabriela Bindea, Bernhard Mlecnik, +7 authors Jérôme Galon
- Bioinformatics
- 2009
We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. ClueGO integrates Gene Ontology (GO) terms as well as… (More)
- Alexander Sturn, John Quackenbush, Zlatko Trajanoski
- Bioinformatics
- 2002
A versatile, platform independent and easy to use Java suite for large-scale gene expression analysis was developed. Genesis integrates various tools for microarray data analysis such as filters,… (More)
- Jérôme Galon, Anne Costes, +13 authors Franck Pagès
- Science
- 2006
The role of the adaptive immune response in controlling the growth and recurrence of human tumors has been controversial. We characterized the tumor-infiltrating immune cells in large cohorts of… (More)
- Franck Pagès, Anne M Berger, +13 authors Jérôme Galon
- The New England journal of medicine
- 2005
BACKGROUND
The role of tumor-infiltrating immune cells in the early metastatic invasion of colorectal cancer is unknown.
METHODS
We studied pathological signs of early metastatic invasion (venous… (More)
- Johannes Rainer, Fátima Sánchez-Cabo, Gernot Stocker, Alexander Sturn, Zlatko Trajanoski
- Nucleic Acids Research
- 2006
CARMAweb (Comprehensive R-based Microarray Analysis web service) is a web application designed for the analysis of microarray data. CARMAweb performs data preprocessing (background correction,… (More)
- Gabriela Bindea, Bernhard Mlecnik, +14 authors Jérôme Galon
- Immunity
- 2013
The complex interactions between tumors and their microenvironment remain to be elucidated. Combining large-scale approaches, we examined the spatio-temporal dynamics of 28 different immune cell… (More)
- Franck Pagès, Amos Kirilovsky, +12 authors Jérôme Galon
- Journal of clinical oncology : official journal…
- 2009
PURPOSE
Many patients who present with early-stage colorectal cancer (International Union Against Cancer TNM stages I and II) are nevertheless at high risk of relapse. We hypothesized that… (More)
- J. S. Yu, S. Ongarello, +4 authors Zlatko Trajanoski
- Bioinformatics
- 2005
MOTIVATION
High-throughput and high-resolution mass spectrometry instruments are increasingly used for disease classification and therapeutic guidance. However, the analysis of immense amount of data… (More)
- Stephan Pabinger, Andreas Dander, +7 authors Zlatko Trajanoski
- Briefings in Bioinformatics
- 2014
Recent advances in genome sequencing technologies provide unprecedented opportunities to characterize individual genomic landscapes and identify mutations relevant for diagnosis and therapy.… (More)
- Matthieu Camus, Marie Tosolini, +10 authors Jérôme Galon
- Cancer research
- 2009
A role for the immune system in controlling the progression of solid tumors has been established in several mouse models. However, the effect of immune responses and tumor escape on patient prognosis… (More)