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PAML: a program package for phylogenetic analysis by maximum likelihood
  • Z. Yang
  • Computer Science, Medicine
  • Comput. Appl. Biosci.
  • 1 October 1997
TLDR
PAML, currently in version 1.2, is a package of programs for phylogenetic analyses of DNA and protein sequences using the method of maximum likelihood (ML). Expand
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  • 1176
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Phylogenetic Analysis by Maximum Likelihood (PAML)
TLDR
PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood (ML). Expand
  • 399
  • 64
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MAXIMUM LIKELIHOOD TREES FROM DNA SEQUENCES: A PECULIAR STATISTICAL ESTIMATION PROBLEM
The parameter space of the phylogenetic tree estimation problem consists of three com? ponents, T, t, and 8. The tree topology T is a discrete entity that is not a proper statistical parameter butExpand
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Statistical Properties of the Maximum Likelihood Method of Phylogenetic Estimation and Comparison With Distance Matrix Methods
A proof is presented that the maximum likelihood (ML) method of phylogenetic estimation from DNA sequences (Felsenstein, 1981, J. Mol. Evol. 17:368-376) is statistically consistent despite theExpand
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Design and Implementation of the Digital Costas Loop Based on Software Defined Radio
TLDR
The frequency offset is the main problem of the conventional SDR receiver for demodulation. Expand
  • 9
  • 2
Maximum likelihood methods for detecting adaptive evolution after gene duplication. Gene and Genome Duplications and the Origin of Novel Gene Functions
TLDR
The rapid accumulation of genomic sequences in public databases will finally allow large scale studies of gene family evolution, including evaluation of the role of positive Darwinian selection following a duplication event. Expand
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  • 1
Bayesian inference in molecular phylogenetics
  • Z. Yang
  • Computer Science
  • Mathematics of Evolution and Phylogeny
  • 2007
  • 19
  • 1
SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model
TLDR
CodeML (part of the PAML package) implements a maximum likelihood-based approach to detect positive selection on a specific branch of a given phylogenetic tree. Expand
  • 20
  • 1
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