Learn More
BACKGROUND High-throughput sequencing makes it possible to rapidly obtain thousands of 16S rDNA sequences from environmental samples. Bioinformatic tools for the analyses of large 16S rDNA sequence databases are needed to comprehensively describe and compare these datasets. RESULTS FastGroupII is a web-based bioinformatics platform to dereplicate large(More)
The elongation cycle of protein synthesis involves the delivery of aminoacyl-transfer RNAs to the aminoacyl-tRNA-binding site (A site) of the ribosome, followed by peptide-bond formation and translocation of the tRNAs through the ribosome to reopen the A site. The translocation reaction is catalysed by elongation factor G (EF-G) in a GTP-dependent manner.(More)
We recently proposed a new approach to parallelization, by decomposing the time domain, instead of the conventional space domain. This improves latency tolerance, and we demonstrated its effectiveness in a practical application, where it scaled to much larger numbers of processors than conventional parallelization. This approach is fundamentally based on(More)
— Molecular Dynamics (MD) is an important atomistic simulation technique, with widespread use in computational chemistry, biology, and materials. An important limitation of MD is that the time step size is typically restricted to the order of femto () seconds. Therefore, a large number of iterations are required to reach realistic time scales. In fact, this(More)
In the past few years, there has been a trend of providing increased computing power through greater number of cores on a chip, rather than through higher clock speeds. In order to exploit the available computing power, applications need to be parallelized efficiently. We consider the solution of Ordinary Differential Equations (ODE) on multicore(More)
Molecular Dynamics is a popular technique to simulate the behavior of physical systems, with resolution at the atomic scale. One of its limitations is that an enormous computational effort is required to simulate to realistic time spans. Conventional parallelization strategies have limited effectiveness in dealing with this difficulty. We recently(More)
This paper pays attention to magnetic flux linkage optimization of a direct-driven surface-mounted permanent magnet synchronous generator (D-SPMSG). A new compact representation of the D-SPMSG nonlinear dynamic differential equations to reduce system parameters is established. Furthermore, the nonlinear dynamic characteristics of new D-SPMSG equations in(More)
1. Introduction 3D techniques and related products have found increasing applications in our life, e.g. 3D photo, film, television, camera as well as 3D animation. They have become the leading edge technology and trend in many industrial sectors. In engineering and manufacture industry, 3D techniques are also widely utilized, they have over the recent years(More)