• Publications
  • Influence
I-TASSER server for protein 3D structure prediction
  • Y. Zhang
  • Computer Science, Medicine
  • BMC Bioinformatics
  • 23 January 2008
BackgroundPrediction of 3-dimensional protein structures from amino acid sequences represents one of the most important problems in computational structural biology. The community-wide CriticalExpand
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How significant is a protein structure similarity with TM-score = 0.5?
MOTIVATION Protein structure similarity is often measured by root mean squared deviation, global distance test score and template modeling score (TM-score). However, the scores themselves cannotExpand
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Schism: a Workload-Driven Approach to Database Replication and Partitioning
We present Schism, a novel workload-aware approach for database partitioning and replication designed to improve scalability of shared-nothing distributed databases. Because distributed transactionsExpand
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WebTables: exploring the power of tables on the web
The World-Wide Web consists of a huge number of unstructured documents, but it also contains structured data in the form of HTML tables. We extracted 14.1 billion HTML tables from Google'sExpand
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CarTel: a distributed mobile sensor computing system
CarTel is a mobile sensor computing system designed to collect, process, deliver, and visualize data from sensors located on mobile units such as automobiles. A CarTel node is a mobile embeddedExpand
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H-store: a high-performance, distributed main memory transaction processing system
Our previous work has shown that architectural and application shifts have resulted in modern OLTP databases increasingly falling short of optimal performance [10]. In particular, the availability ofExpand
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I-TASSER server: new development for protein structure and function predictions
The I-TASSER server (http://zhanglab.ccmb.med.umich.edu/I-TASSER) is an online resource for automated protein structure prediction and structure-based function annotation. In I-TASSER, structuralExpand
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COFACTOR: an accurate comparative algorithm for structure-based protein function annotation
We have developed a new COFACTOR webserver for automated structure-based protein function annotation. Starting from a structural model, given by either experimental determination or computationalExpand
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SPICKER: A clustering approach to identify near‐native protein folds
We have developed SPICKER, a simple and efficient strategy to identify near‐native folds by clustering protein structures generated during computer simulations. In general, the most populatedExpand
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BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions
BioLiP (http://zhanglab.ccmb.med.umich.edu/BioLiP/) is a semi-manually curated database for biologically relevant ligand–protein interactions. Establishing interactions between protein andExpand
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