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EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences.
16S rRNA gene sequences have been widely used for the identification of prokaryotes. However, the flood of sequences of non-type strains and the lack of a peer-reviewed database for 16S rRNA geneExpand
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits.
Based on an overview of progress in molecular systematics of the true fungi (Fungi/Eumycota) since 1990, little overlap was found among single-locus data matrices, which explains why no large-scaleExpand
Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi).
A phylogeny of the fungal phylum Basidiomycota is presented based on a survey of 160 taxa and five nuclear genes. Two genes, rpb2, and tef1, are presented in detail. The rpb2 gene is more variableExpand
Taxonomic evaluation of the genera Ruegeria and Silicibacter: a proposal to transfer the genus Silicibacter Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. 1999.
  • H. Yi, Y. Lim, J. Chun
  • Biology, Medicine
  • International journal of systematic and…
  • 1 April 2007
The taxonomic positions of the genera Ruegeria and Silicibacter were evaluated by a polyphasic investigation. It was evident from 16S rRNA gene sequence analysis that both genera are closely relatedExpand
Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa
This is a continuity of a series of taxonomic and phylogenetic papers on the fungi where materials were collected from many countries, examined and described. In addition to extensive morphologicalExpand
Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing
Dissection of prokaryotic community structure is prerequisite to understand their ecological roles. Various methods are available for such a purpose which amplification and sequencing of 16S rRNAExpand
Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species
This is the sixth in a series of papers where we bring collaborating mycologists together to produce a set of notes of several taxa of fungi. In this study we introduce a new familyExpand
Burkholderia sordidicola sp. nov., isolated from the white-rot fungus Phanerochaete sordida.
Two bacterial strains associated with the white-rot fungus Phanerochaete sordida were subjected to taxonomic investigation. The isolates, designated KCTC 12081(T) and KCTC 12082, were Gram-negative,Expand
Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi
This article is the ninth in the series of Fungal Diversity Notes, where 107 taxa distributed in three phyla, nine classes, 31 orders and 57 families are described and illustrated. Taxa described inExpand
Multigene phylogenies of Ophiostoma clavigerum and closely related species from bark beetle-attacked Pinus in North America.
Leptographium pyrinum, Leptographium terebrantis, Ophiostoma aureum, Ophiostoma clavigerum, and Ophiostoma robustum are very similar in morphology, host trees choice, and the way they areExpand