• Publications
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Predicting protein–protein interactions based only on sequences information
Protein–protein interactions (PPIs) are central to most biological processes. Although efforts have been devoted to the development of methodology for predicting PPIs and protein interactionExpand
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Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
We sequenced the genome of Saccharomyces cerevisiae strain YJM789, which was derived from a yeast isolated from the lung of an AIDS patient with pneumonia. The strain is used for studies of fungalExpand
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Novel biomarkers for pre-diabetes identified by metabolomics
A targeted metabolomics approach was used to identify candidate biomarkers of pre-diabetes. The relevance of the identified metabolites is further corroborated with a protein-metabolite interactionExpand
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HIT: linking herbal active ingredients to targets
  • H. Ye, L. Ye, +9 authors Z. Cao
  • Computer Science, Biology
  • Nucleic Acids Res.
  • 20 November 2010
The information of protein targets and small molecule has been highly valued by biomedical and pharmaceutical research. Several protein target databases are available online for FDA-approved drugs asExpand
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AtPID: Arabidopsis thaliana protein interactome database—an integrative platform for plant systems biology
Arabidopsis thaliana Protein Interactome Database (AtPID) is an object database that integrates data from several bioinformatics prediction methods and manually collected information from theExpand
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The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods
Representing a basal branch of arachnids, scorpions are known as ‘living fossils’ that maintain an ancient anatomy and are adapted to have survived extreme climate changes. Here we report the genomeExpand
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SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications*
With the rapid expansion of protein post-translational modification (PTM) research based on large-scale proteomic work, there is an increasing demand for a suitable repository to analyze PTM data.Expand
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Differences between Human Plasma and Serum Metabolite Profiles
Background Human plasma and serum are widely used matrices in clinical and biological studies. However, different collecting procedures and the coagulation cascade influence concentrations of bothExpand
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Estimating accuracy of RNA-Seq and microarrays with proteomics
BackgroundMicroarrays revolutionized biological research by enabling gene expression comparisons on a transcriptome-wide scale. Microarrays, however, do not estimate absolute expression levelExpand
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Predicting O-glycosylation sites in mammalian proteins by using SVMs
O-glycosylation is one of the most important, frequent and complex post-translational modifications. This modification can activate and affect protein functions. Here, we present three support vectorExpand
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