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Detection of copy number variations in rice using array-based comparative genomic hybridization
TLDR
A high-resolution map of CNVs in the rice genome is compiled, showing 641 CNVs between the genomes of the rice cultivars 'Nipponbare' and 'Guang-lu-ai 4', and these CNVs contain known genes. Expand
Downregulation of long noncoding RNA HOTAIRM1 promotes monocyte/dendritic cell differentiation through competitively binding to endogenous miR-3960
TLDR
This study demonstrates that HOTAIRM1 competitively binds to miR-3960 and finally regulates the process of hematopoiesis, which reveals a novel regulatory mechanism of lncRNA function. Expand
Genome-wide association study of blast resistance in indica rice
TLDR
This study identified the gene Os11g0704100, a disease resistance protein containing nucleotide binding site-leucine rich repeat domain, as the main candidate gene of Pif, and identified novel functional candidate genes, which might participate in the resistance regulation. Expand
Uncovering novel loci for mesocotyl elongation and shoot length in indica rice through genome-wide association mapping
TLDR
A genome-wide association study, based on 4136 SNPs, was performed using a compressed mixed linear model that accounted for population structure and relative kinship to detect novel loci for mesocotyl elongation and shoot length in rice seedling emergence. Expand
Genetic variation and association mapping for 12 agronomic traits in indica rice
TLDR
This work detected multiple novel loci and candidate genes related to rice morphological traits, and the work demonstrated that genome-wide association studies are powerful strategies for uncovering the genetic variations of complex traits and identifying candidate genes in rice, even though the linkage disequilibrium decayed slowly in self-pollinating species. Expand
Genome-wide copy number variations in Oryza sativa L.
TLDR
Higher recombination rates and the presence of homologueous gene clusters are probably predispositions for generation of the higher number of CNVs on chromosome 11 by non-allelic homologous recombination events. Expand
Transcriptome analysis of rice root heterosis by RNA-Seq
TLDR
An extensive transcriptome dataset was obtained by RNA-Seq, giving a comprehensive overview of the root transcriptomes at tillering and heading stages in a heterotic rice cross and providing a useful resource for the rice research community. Expand
Genome wide association mapping for grain shape traits in indica rice
TLDR
These results revealed that besides GS3 and qSW5, multiple novel loci and mechanisms were involved in determining rice grain shape, and provided valuable information for understanding of the genetic control of grain shape and molecular marker assistant selection (MAS) breeding in rice. Expand
Exploration of genetic selection in rice leaf length and width
TLDR
Analysis of phenotypic effects indicated that all of the detected traits exhibited continuous, transgressive distributions in the DH population, and correlation analysis revealed a strong association between the two adjacent leaves for the same trait. Expand
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