• Publications
  • Influence
De novo peptide sequencing by deep learning
We propose DeepNovo, a deep neural network model that combines recent advances in deep learning and dynamic programming to solve the de novo peptide sequencing problem. Expand
  • 91
  • 3
Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry
We present DeepNovo-DIA, a de novo peptide-sequencing method for data-independent acquisition (DIA) mass spectrometry data. We use neural networks to capture precursor and fragment ions across m/z,Expand
  • 49
  • 1
Complete Genome Sequence of Multidrug-Resistant Citrobacter freundii Strain P10159, Isolated from Urine Samples from a Patient with Esophageal Carcinoma
ABSTRACT Citrobacter freundii is an opportunistic pathogen that can cause diarrhea, septicemia, meningitis, and urinary tract infections. We report here the complete genome sequence of C. freundiiExpand
  • 6
  • 1
Complete genome sequence of Menghai flavivirus, a novel insect-specific flavivirus from China
Menghai flavivirus (MFV) was isolated from Aedes albopictus in Menghai county of Yunnan Province, China, during an arboviruses screening program in August 2010. Whole genome sequencing of MFV wasExpand
  • 5
  • 1
Complete Genome Sequence of IME207, a Novel Bacteriophage Which Can Lyse Multidrug-Resistant Klebsiella pneumoniae and Salmonella
ABSTRACT A novel lytic Salmonella bacteriophage was isolated by using Klebsiella pneumoniae as host cells. The phage's genome was determined to be 47,564 bp and has the highest similarity toExpand
  • 4
  • 1
A novel mosquito-borne reassortant orbivirus isolated from Xishuangbanna, China
In this study, we report a novel mosquito-borne reassortant Orbivirus species, which we named Banna orbivirus (BAOV). The virus was isolated from a Culex tritaeniorhynchus pool collected inExpand
  • 4
  • 1
  • PDF
A novel termini analysis theory using HTS data alone for the identification of Enterococcus phage EF4-like genome termini
BackgroundEnterococcus faecalis and Enterococcus faecium are typical enterococcal bacterial pathogens. Antibiotic resistance means that the identification of novel E. faecalis and E. faecium phagesExpand
  • 17
Intranasal treatment with bacteriophage rescues mice from Acinetobacter baumannii-mediated pneumonia.
AIM With the emergence of drug-resistant bacteria, finding alternative agents to treat antibiotic-resistant bacterial infections is imperative. MATERIALS & METHODS A mouse pneumonia model wasExpand
  • 22
Potential of a lytic bacteriophage to disrupt Acinetobacter baumannii biofilms in vitro.
AIM The ability of Acinetobacter baumannii to form biofilms and develop antibiotic resistance makes it difficult to control infections caused by this bacterium. In this study, we explored theExpand
  • 11
One-against-All Weighted Dynamic Time Warping for Language-Independent and Speaker-Dependent Speech Recognition in Adverse Conditions
Considering personal privacy and difficulty of obtaining training material for many seldom used English words and (often non-English) names, language-independent (LI) with lightweightExpand
  • 9
  • PDF