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DAMBE: software package for data analysis in molecular biology and evolution.
DAMBE (data analysis in molecular biology and evolution) is an integrated software package for converting, manipulating, statistically and graphically describing, and analyzing molecular sequence… Expand
An index of substitution saturation and its application.
- X. Xia, Zheng Xie, M. Salemi, L. Chen, Y. Wang
- Biology, Medicine
- Molecular phylogenetics and evolution
- 2003
We introduce a new index to measure substitution saturation in a set of aligned nucleotide sequences. The index is based on the notion of entropy in information theory. We derive the critical values… Expand
DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution
- X. Xia
- Biology, Medicine
- Molecular biology and evolution
- 5 April 2013
Since its first release in 2001 as mainly a software package for phylogenetic analysis, data analysis for molecular biology and evolution (DAMBE) has gained many new functions that may be classified… Expand
Data Analysis in Molecular Biology and Evolution
- X. Xia
- Computer Science, Biology
- Springer US
- 2002
TLDR
Assessing substitution saturation with DAMBE THEORY
- X. Xia
- 2008
The accuracy of phylogenetic reconstruction depends mainly on (1) the sequence quality, (2) the correct identification of homologous sites by sequence alignment, (3) regularity of the substitution… Expand
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- 31
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DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution
- X. Xia
- Biology, Medicine
- Molecular biology and evolution
- 14 April 2018
Abstract DAMBE is a comprehensive software package for genomic and phylogenetic data analysis on Windows, Linux, and Macintosh computers. New functions include imputing missing distances and… Expand
DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution
- X. Xia
- Biology, Medicine
- The Journal of heredity
- 4 April 2017
Abstract DAMBE is a comprehensive software workbench for data analysis in molecular biology, phylogenetics, and evolution. Several important new functions have been added since version 5 of DAMBE: 1)… Expand
Extreme Genomic CpG Deficiency in SARS-CoV-2 and Evasion of Host Antiviral Defense
- X. Xia
- Biology, Medicine
- Molecular biology and evolution
- 14 April 2020
Abstract Wild mammalian species, including bats, constitute the natural reservoir of betacoronavirus (including SARS, MERS, and the deadly SARS-CoV-2). Different hosts or host tissues provide… Expand