• Publications
  • Influence
DAMBE: software package for data analysis in molecular biology and evolution.
  • X. Xia, Z. Xie
  • Biology, Medicine
  • The Journal of heredity
  • 1 July 2001
DAMBE (data analysis in molecular biology and evolution) is an integrated software package for converting, manipulating, statistically and graphically describing, and analyzing molecular sequenceExpand
  • 2,133
  • 468
An index of substitution saturation and its application.
We introduce a new index to measure substitution saturation in a set of aligned nucleotide sequences. The index is based on the notion of entropy in information theory. We derive the critical valuesExpand
  • 1,065
  • 236
  • PDF
DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution
  • X. Xia
  • Biology, Medicine
  • Molecular biology and evolution
  • 5 April 2013
Since its first release in 2001 as mainly a software package for phylogenetic analysis, data analysis for molecular biology and evolution (DAMBE) has gained many new functions that may be classifiedExpand
  • 805
  • 175
  • PDF
Data Analysis in Molecular Biology and Evolution
  • X. Xia
  • Computer Science, Biology
  • Springer US
  • 2002
TLDR
Data Analysis In Molecular Biology And Evolution introduces biologists to DAMBE, a proprietary, user-friendly computer program for molecular data analysis. Expand
  • 704
  • 106
  • PDF
Rapid evolution of animal mitochondrial DNA
  • 407
  • 40
Assessing substitution saturation with DAMBE THEORY
The accuracy of phylogenetic reconstruction depends mainly on (1) the sequence quality, (2) the correct identification of homologous sites by sequence alignment, (3) regularity of the substitutionExpand
  • 105
  • 31
  • PDF
DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution
  • X. Xia
  • Biology, Medicine
  • Molecular biology and evolution
  • 14 April 2018
Abstract DAMBE is a comprehensive software package for genomic and phylogenetic data analysis on Windows, Linux, and Macintosh computers. New functions include imputing missing distances andExpand
  • 149
  • 27
  • PDF
DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution
  • X. Xia
  • Biology, Medicine
  • The Journal of heredity
  • 4 April 2017
Abstract DAMBE is a comprehensive software workbench for data analysis in molecular biology, phylogenetics, and evolution. Several important new functions have been added since version 5 of DAMBE: 1)Expand
  • 168
  • 24
  • PDF
Extreme Genomic CpG Deficiency in SARS-CoV-2 and Evasion of Host Antiviral Defense
  • X. Xia
  • Biology, Medicine
  • Molecular biology and evolution
  • 14 April 2020
Abstract Wild mammalian species, including bats, constitute the natural reservoir of betacoronavirus (including SARS, MERS, and the deadly SARS-CoV-2). Different hosts or host tissues provideExpand
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  • 16
  • PDF