N-body problems pervade many different branches of numerical simulation. While the exact computation of the pairwise interactions between all N components of such a system is O(N) in complexity,â€¦ (More)

Many realistic biomolecular simulations require use of periodic boundary conditions to create a surface-free environment for the molecule of interest and associated solvent molecules to interact.â€¦ (More)

Two new algorithms for Golomb ruler derivation were developed and are presented together with the previously published standard algorithm. One of the new algorithms was used to prove computationallyâ€¦ (More)

20 [9] A. Greenbaum. Parallelizing the adaptive fast multipole method on a shared memory MIMD machine. NYU Ultracomputer Note 162, June 1989. [14] T. Hrycak and V. Rokhlin. An improved fast multipoleâ€¦ (More)