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NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop and laptop computers. NAMD works with AMBER and CHARMM potential functions,(More)
The Technical Note series provides an outlet for a variety of NCAR manuscripts that contribute in specialized ways to the body of scientific knowledge but which are not suitable for journal, monograph, or book publication. Reports in this series are issued by the NCAR Scientific Divisions ; copies may be obtained on request from the Publications Office of(More)
The Technical Note series provides an outlet for a variety of NCAR manuscripts that contribute in specialized ways to the body of scientific knowledge but which are not suitable for journal, monograph, or book publication. Reports in this series are issued by the NCAR Scientific Divisions ; copies may be obtained on request from the Publications Office of(More)
—Voice over Internet Protocol (VoIP) over a wireless local area network (WLAN) is poised to become an important In-ternet application. However, two major technical problems that stand in the way are: 1) low VoIP capacity in WLAN and 2) unacceptable VoIP performance in the presence of coexisting traffic from other applications. With each VoIP stream(More)
The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress response and the proteome of the shell. The oyster genome is(More)
<i>Map-matching</i> is the process of aligning a sequence of observed user positions with the road network on a digital map. It is a fundamental pre-processing step for many applications, such as moving object management, traffic flow analysis, and driving directions. In practice there exists huge amount of low-sampling-rate (e.g., one point every 2--5(More)
Here we present the first diploid genome sequence of an Asian individual. The genome was sequenced to 36-fold average coverage using massively parallel sequencing technology. We aligned the short reads onto the NCBI human reference genome to 99.97% coverage, and guided by the reference genome, we used uniquely mapped reads to assemble a high-quality(More)