Wei Wang

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Anthony Worsley48
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48Shaoguo Ru
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45Jianxin Chen
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Scalable molecular dynamics with NAMD
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop and laptop computers. NAMD works with AMBER and CHARMM potential functions,… (More)
A Description of the Advanced Research Wrf Version 2
The Technical Note series provides an outlet for a variety of NCAR manuscripts that contribute in specialized ways to the body of scientific knowledge but which are not suitable for journal, monograph, or book publication. Reports in this series are issued by the NCAR Scientific Divisions ; copies may be obtained on request from the Publications Office of… (More)
A Description of the Advanced Research Wrf Version 3
The Technical Note series provides an outlet for a variety of NCAR manuscripts that contribute in specialized ways to the body of scientific knowledge but which are not suitable for journal, monograph, or book publication. Reports in this series are issued by the NCAR Scientific Divisions ; copies may be obtained on request from the Publications Office of… (More)
The oyster genome reveals stress adaptation and complexity of shell formation.
The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress response and the proteome of the shell. The oyster genome is… (More)
Map-matching for low-sampling-rate GPS trajectories
<i>Map-matching</i> is the process of aligning a sequence of observed user positions with the road network on a digital map. It is a fundamental pre-processing step for many applications, such as moving object management, traffic flow analysis, and driving directions. In practice there exists huge amount of low-sampling-rate (e.g., one point every 2--5… (More)
The diploid genome sequence of an Asian individual.
Here we present the first diploid genome sequence of an Asian individual. The genome was sequenced to 36-fold average coverage using massively parallel sequencing technology. We aligned the short reads onto the NCBI human reference genome to 99.97% coverage, and guided by the reference genome, we used uniquely mapped reads to assemble a high-quality… (More)
Sequencing of 50 human exomes reveals adaptation to high altitude.
Residents of the Tibetan Plateau show heritable adaptations to extreme altitude. We sequenced 50 exomes of ethnic Tibetans, encompassing coding sequences of 92% of human genes, with an average coverage of 18x per individual. Genes showing population-specific allele frequency changes, which represent strong candidates for altitude adaptation, were… (More)
Measuring visual saliency by Site Entropy Rate
In this paper, we propose a new computational model for visual saliency derived from the information maximization principle. The model is inspired by a few well acknowledged biological facts. To compute the saliency spots of an image, the model first extracts a number of sub-band feature maps using learned sparse codes. It adopts a fully-connected graph… (More)
U-Pb ages from the neoproterozoic Doushantuo Formation, China.
U-Pb zircon dates from volcanic ash beds within the Doushantuo Formation (China) indicate that its deposition occurred between 635 and 551 million years ago. The base records termination of the global-scale Marinoan glaciation and is coeval with similar dated rocks from Namibia, indicating synchronous deglaciation. Carbon isotopic and sequence-stratigraphic… (More)
Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA.
As modern humans migrated out of Africa, they encountered many new environmental conditions, including greater temperature extremes, different pathogens and higher altitudes. These diverse environments are likely to have acted as agents of natural selection and to have led to local adaptations. One of the most celebrated examples in humans is the adaptation… (More)