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- Tomi Silander, Petri Myllymäki
- UAI
- 2006

We study the problem of learning the best Bayesian network structure with respect to a decomposable score such as BDe, BIC or AIC. This problem is known to be NP-hard, which means that solving it becomes quickly infeasible as the number of variables increases. Nevertheless, in this paper we show that it is possible to learn the best Bayesian network… (More)

- Petri Myllymäki, Tomi Silander, Henry Tirri, Pekka Uronen
- International Journal on Artificial Intelligence…
- 2002

B-Course is a free web-based online data analysis tool, which allows the users to analyze their data for multivariate probabilistic dependencies. These dependencies are represented as Bayesian network models. In addition to this, B-Course also offers facilities for inferring certain type of causal dependencies from the data. The software uses a novel… (More)

Given a set of possible models (e.g., Bayesian network structures) and a data sample, in the unsupervised model selection problem the task is to choose the most accurate model with respect to the domain joint probabil ity distribution. In contrast to this, in su pervised model selection it is a priori known that the chosen model will be used in the future… (More)

- Russell S. Thomas, David R. Rank, +9 authors Christopher A. Bradfield
- Molecular pharmacology
- 2001

We have developed an approach to classify toxicants based upon their influence on profiles of mRNA transcripts. Changes in liver gene expression were examined after exposure of mice to 24 model treatments that fall into five well-studied toxicological categories: peroxisome proliferators, aryl hydrocarbon receptor agonists, noncoplanar polychlorinated… (More)

- Koen Deforche, Tomi Silander, +6 authors Anne-Mieke Vandamme
- Bioinformatics
- 2006

Human Immunodeficiency Virus-1 (HIV-1) antiviral resistance is a major cause of antiviral therapy failure and compromises future treatment options. As a consequence, resistance testing is the standard of care. Because of the high degree of HIV-1 natural variation and complex interactions, the role of resistance mutations is in many cases insufficiently… (More)

- Tomi Silander, Teemu Roos, Petri Myllymäki
- Int. J. Approx. Reasoning
- 2010

We consider the problem of learning Bayesian network models in a non-informative setting, where the only available information is a set of observational data, and no background knowledge is available. The problem can be divided into two different subtasks: learning the structure of the network (a set of independence relations), and learning the parameters… (More)

- Petri Kontkanen, Petri Myllymäki, Tomi Silander, Henry Tirri
- ECML
- 1998

In this paper we present a probabilistic formalization of the instance-based learning approach. In our Bayesian framework, moving from the construction of an explicit hypothesis to a data-driven instance-based learning approach, is equivalent to averaging over all the (possibly innnitely many) individual models. The general Bayesian instance-based learning… (More)

- Tomi Silander, Petri Kontkanen, Petri Myllymäki
- UAI
- 2007

BDeu marginal likelihood score is a popular model selection criterion for selecting a Bayesian network structure based on sample data. This non-informative scoring criterion assigns same score for network structures that encode same independence statements. However, before applying the BDeu score, one must determine a single parameter, the equivalent sample… (More)

We analyze differences between two information-theoretically motivated ap proaches to statistical inference and model selection: the Minimum Description Length (MDL) principle, and the Minimum Message Length (MML) principle. Based on this analysis, we present two revised versions of MML: a pointwise estimator which gives the MML-optimal single parameter… (More)

- Manfred Jaeger, Jens Dalgaard Nielsen, Tomi Silander
- Int. J. Approx. Reasoning
- 2006

Probabilistic decision graphs (PDGs) are a representation language for probability distributions based on binary decision diagrams. PDGs can encode (context-specific) independence relations that cannot be captured in a Bayesian network structure, and can sometimes provide computationally more efficient representations than Bayesian networks. In this paper… (More)