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This paper introduces the DUP System, a simple framework for parallel stream processing. The DUP System enables developers to compose applications from stages written in almost any programming language and to run distributed streaming applications across all POSIX-compatible platforms. Parallel applications written with the DUP System do not suffer from(More)
MOTIVATION Nucleic acid diagnostics has high demands for non-heuristic exact and approximate oligonucleotide string matching concerning in silico primer/probe design in huge nucleic acid sequence collections. Unfortunately, public sequence repositories grow much faster than computer hardware performance and main memory capacity do. This growth imposes(More)
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