• Publications
  • Influence
The Tree of Life and a New Classification of Bony Fishes
The tree of life of fishes is in a state of flux because we still lack a comprehensive phylogeny that includes all major groups. The situation is most critical for a large clade of spiny-finnedExpand
The Cell Collective: Toward an open and collaborative approach to systems biology
TLDR
The Cell Collective is a web-based platform that enables laboratory scientists from across the globe to collaboratively build large-scale models of various biological processes, and simulate/analyze them in real time. Expand
FluGenome: a web tool for genotyping influenza A virus
TLDR
We have developed a nomenclature to name influenza A genotypes and implemented a web server, FluGenome (http://www.flugenome.org/), for the assignment of lineages. Expand
PhyloMarker–-A Tool for Mining Phylogenetic Markers through Genome Comparison: Application of the Mouse Lemur (Genus Microcebus) Phylogeny
Molecular phylogeny is a fundamental tool to understanding the evolution of all life forms. One common issue faced by molecular phylogeny is the lack of sufficient molecular markers. Here, we presentExpand
Bio-Logic Builder: A Non-Technical Tool for Building Dynamical, Qualitative Models
TLDR
We present a web-based tool, Bio-Logic Builder, that enables laboratory scientists to define mathematical representations (based on a discrete formalism) of biological regulatory mechanisms in a modular and non-technical fashion. Expand
GenomeBlast: a web tool for small genome comparison
TLDR
We developed a Web tool for comparative analysis of small genomes, which allows the user not only to identify unique genes and homologous gene candidates among multiple genomes, but also to view their graphical distributions on genomes and to reconstruct genome phylogeny. Expand
GenomeBlast: A Web Tool for Small Genome Comparison
TLDR
We developed GenomeBlast, a web tool for comparative analysis of multiple small genomes. Expand
Security and Audit Trail Capabilities of a Facilitated Interface Used to Populate a Database System with Text and Graphical Data Using Widely Available Software
TLDR
In prior work we described techniques used to capture, store, and retrieve narrative data forms from a database using widely available off the shelf software. Expand
Dynamic link budget simulation for high altitude balloon data link experiment
TLDR
This paper addresses the challenges of modeling and simulating an 802.11-based data link throughout its flight on a high altitude research balloon. Expand
PhyloMarker—A Tool for Mining Phylogenetic Markers Through Genome Comparison: Application of the Mouse Lemur (Genus Microcebus) Phylogeny
Molecular phylogeny is a fundamental tool to understanding the evolution of all life forms. One common issue faced by molecular phylogeny is the lack of sufficient molecular markers. Here, we presentExpand