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- Publications
- Influence
MassBank: a public repository for sharing mass spectral data for life sciences.
- Hisayuki Horai, M. Arita, +32 authors T. Nishioka
- Chemistry, Medicine
- Journal of mass spectrometry : JMS
- 1 July 2010
MassBank is the first public repository of mass spectra of small chemical compounds for life sciences (<3000 Da). The database contains 605 electron-ionization mass spectrometry (EI-MS), 137 fast… Expand
Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor.
- T. Tohge, Y. Nishiyama, +10 authors K. Saito
- Biology, Medicine
- The Plant journal : for cell and molecular…
- 7 March 2005
The integration of metabolomics and transcriptomics can provide precise information on gene-to-metabolite networks for identifying the function of unknown genes unless there has been a… Expand
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis
- M. Hirai, K. Sugiyama, +11 authors K. Saito
- Biology, Medicine
- Proceedings of the National Academy of Sciences
- 10 April 2007
Understanding plant metabolism as an integrated system is essential for metabolic engineering aimed at the effective production of compounds useful to human life and the global environment. The… Expand
Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis[W][OA]
- Grit Rubin, T. Tohge, F. Matsuda, K. Saito, Wolf-Rüdiger Scheible
- Biology, Medicine
- The Plant Cell Online
- 1 November 2009
Nitrogen (N) and nitrate (NO3−) per se regulate many aspects of plant metabolism, growth, and development. N/NO3− also suppresses parts of secondary metabolism, including anthocyanin synthesis.… Expand
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.
- Marc Lohse, A. Nagel, +7 authors B. Usadel
- Computer Science, Medicine
- Plant, cell & environment
- 1 May 2014
TLDR
The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity.
- K. Saito, K. Yonekura-Sakakibara, +4 authors A. Fernie
- Biology, Medicine
- Plant physiology and biochemistry : PPB
- 1 November 2013
Flavonoids are representative plant secondary products. In the model plant Arabidopsis thaliana, at least 54 flavonoid molecules (35 flavonols, 11 anthocyanins and 8 proanthocyanidins) are found.… Expand
Metabolic priming by a secreted fungal effector
- Armin Djamei, Kerstin Schipper, +14 authors R. Kahmann
- Biology, Medicine
- Nature
- 20 October 2011
Maize smut caused by the fungus Ustilago maydis is a widespread disease characterized by the development of large plant tumours. U. maydis is a biotrophic pathogen that requires living plant tissue… Expand
JUNGBRUNNEN1, a Reactive Oxygen Species–Responsive NAC Transcription Factor, Regulates Longevity in Arabidopsis[W][OA]
- A. Wu, A. D. Allu, +12 authors S. Balazadeh
- Biology, Medicine
- Plant Cell
- 1 February 2012
Aging in plants is an intricate process that balances vegetative growth with flowering and reproductive success. This work describes the identification of JUNGBRUNNEN1, a NAC transcription factor… Expand
Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids
- Ryo Nakabayashi, K. Yonekura-Sakakibara, +11 authors K. Saito
- Biology, Medicine
- The Plant journal : for cell and molecular…
- 2 December 2013
The notion that plants use specialized metabolism to protect against environmental stresses needs to be experimentally proven by addressing the question of whether stress tolerance by specialized… Expand
Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene–Metabolite Correlations in Arabidopsis[W][OA]
- K. Yonekura-Sakakibara, T. Tohge, +6 authors K. Saito
- Biology, Medicine
- The Plant Cell Online
- 1 August 2008
To complete the metabolic map for an entire class of compounds, it is essential to identify gene–metabolite correlations of a metabolic pathway. We used liquid chromatography–mass spectrometry… Expand