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- Publications
- Influence
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
- S. Schuster, D. Fell, T. Dandekar
- Biology, Medicine
- Nature Biotechnology
- 1 March 2000
A set of linear pathways often does not capture the full range of behaviors of a metabolic network. The concept of ‘elementary flux modes’ provides a mathematical tool to define and comprehensively… Expand
Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.
- S. Schuster, T. Dandekar, D. Fell
- Biology, Medicine
- Trends in biotechnology
- 1 February 1999
Rational metabolic engineering requires powerful theoretical methods such as pathway analysis, in which the topology of metabolic networks is considered. All metabolic capabilities in steady states… Expand
Identifying functional modules in protein–protein interaction networks: an integrated exact approach
- M. Dittrich, G. Klau, A. Rosenwald, T. Dandekar, T. Müller
- Computer Science, Medicine
- ISMB
- 1 July 2008
TLDR
5.8S-28S rRNA interaction and HMM-based ITS2 annotation.
- A. Keller, T. Schleicher, J. Schultz, T. Mueller, T. Dandekar, M. Wolf
- Biology, Medicine
- Gene
- 1 February 2009
The internal transcribed spacer 2 (ITS2) of the nuclear ribosomal repeat unit is one of the most commonly applied phylogenetic markers. It is a fast evolving locus, which makes it appropriate for… Expand
4SALE – A tool for synchronous RNA sequence and secondary structure alignment and editing
- Philipp N. Seibel, T. Müller, T. Dandekar, J. Schultz, M. Wolf
- Computer Science, Medicine
- BMC Bioinformatics
- 13 November 2006
TLDR
Distinguishing species.
- T. Mueller, N. Philippi, T. Dandekar, J. Schultz, M. Wolf
- Medicine
- RNA
- 2007
Given two organisms, how can one distinguish whether they belong to the same species or not? This might be straightforward for two divergent organisms, but can be extremely difficult and laborious… Expand
ProfDistS: (profile-) distance based phylogeny on sequence - structure alignments
- M. Wolf, Benjamin Ruderisch, T. Dandekar, J. Schultz, T. Müller
- Biology, Computer Science
- Bioinform.
- 15 October 2008
TLDR
The internal transcribed spacer 2 database—a web server for (not only) low level phylogenetic analyses
- J. Schultz, T. Müller, Marco Achtziger, Philipp N. Seibel, T. Dandekar, M. Wolf
- Medicine, Biology
- Nucleic Acids Res.
- 1 July 2006
TLDR
The ITS2 Database II: homology modelling RNA structure for molecular systematics
- C. Selig, M. Wolf, T. Müller, T. Dandekar, J. Schultz
- Biology, Medicine
- Nucleic Acids Res.
- 11 October 2007
TLDR
BioNet: an R-Package for the functional analysis of biological networks
- Daniela Beisser, G. Klau, T. Dandekar, T. Müller, M. Dittrich
- Computer Science, Medicine
- Bioinform.
- 15 April 2010
TLDR