Sungroh Yoon

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In this paper, we present a virtual machine based SSD Simulator, VSSIM (Virtual SSD Simulator). VSSIM intends to address the issues of the trace driven simulation, e.g. trace re-scaling, accurate replay, etc. VSSIM operates on top of QEMU/KVM with software based SSD module. VSSIM runs in realtime and allows the user to measure both the host performance and(More)
MOTIVATION MicroRNAs (miRNAs) are small endogenous RNAs that can play important regulatory roles via the RNA-interference pathway by targeting mRNAs for cleavage or translational repression. We propose a computational method to predict miRNA regulatory modules (MRMs) or groups of miRNAs and target genes that are believed to participate cooperatively in(More)
In NAND Flash-based SSDs, deduplication can provide an effective resolution of three critical issues: cell lifetime, write performance, and garbage collection overhead. However, deduplication at SSD device level distinguishes itself from the one at enterprise storage systems in many aspects, whose success lies in proper exploitation of underlying very(More)
We propose a simulation framework that can model a house equipped with various home appliances and next-generation smart metering devices. This simulator can predict the power dissipation profiles of individual appliances as well as the cumulative energy consumption of the house in a realistic manner. We utilize SystemC, a concurrent system-modeling(More)
In this work, we perform μsec time scale analysis on energy consumption behavior of the SSD Write operation and exploit this information to extract key technical characteristics of SSD internals: channel utilization policy, page allocation strategy, cluster size, channel switch delay, way switch delay, etc. We found that some SSDs adopt a multi-page cluster(More)
In the era of big data, transformation of biomedical big data into valuable knowledge has been one of the most important challenges in bioinformatics. Deep learning has advanced rapidly since the early 2000s and now demonstrates state-of-the-art performance in various fields. Accordingly, application of deep learning in bioinformatics to gain insight from(More)
Dynamic Voltage and Frequency Scaling (DVFS) is an effective low-power technique for real-time workloads. Its effectiveness critically depends on the accurate prediction of the task execution time. Many DVFS approaches have been proposed, but they are insufficient for highly nonstationary workloads. Several recent DVFS techniques adopted adaptive filters to(More)
BIOCHEMISTRY Correction for “RNA design rules from a massive open laboratory,” by Jeehyung Lee, Wipapat Kladwang, Minjae Lee, Daniel Cantu, Martin Azizyan, Hanjoo Kim, Alex Limpaecher, Sungroh Yoon, Adrien Treuille, Rhiju Das, and EteRNA Participants, which appeared in issue 6, February 11, 2014, of Proc Natl Acad Sci USA (111:2122–2127; first published(More)
MicroRNAs (miRNAs) are a class of small RNAs of 19-23 nucleotides that regulate gene expression through target mRNA degradation or translational gene silencing. The miRNAs are reported to be involved in many biological processes, and the discovery of miRNAs has been provided great impacts on computational biology as well as traditional biology. Most(More)
The biclustering method can be a very useful analysis tool when some genes have multiple functions and experimental conditions are diverse in gene expression measurement. This is because the biclustering approach, in contrast to the conventional clustering techniques, focuses on finding a subset of the genes and a subset of the experimental conditions that(More)