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We describe a discrete-time, stochastic population model with density dependence, environmental-type process noise, and lognormal observation or sampling error. The model, a stochastic version of the Gompertz model, can be transformed into a linear Gaussian state-space model (Kalman filter) for convenient fitting to time series data. The model has a… (More)

Maximum likelihood estimation for Generalized Linear Mixed Models (GLMM), an important class of statistical models with substantial applications in epidemiology, medical statistics, and many other fields, poses significant computational difficulties. In this article, we use data cloning, a simple computational method that exploits advances in Bayesian… (More)

- Subhash R Lele, Brian Dennis, Frithjof Lutscher
- Ecology letters
- 2007

We introduce a new statistical computing method, called data cloning, to calculate maximum likelihood estimates and their standard errors for complex ecological models. Although the method uses the Bayesian framework and exploits the computational simplicity of the Markov chain Monte Carlo (MCMC) algorithms, it provides valid frequentist inferences such as… (More)

- Subhash R Lele, Jonah L Keim
- Ecology
- 2006

Understanding how organisms selectively use resources is essential for designing wildlife management strategies. The probability that an individual uses a given resource, as characterized by environmental factors, can be quantified in terms of the resource selection probability function (RSPF). The present literature on the topic has claimed that, except… (More)

- Joan T Richtsmeier, Valerie Burke DeLeon, Subhash R Lele
- American journal of physical anthropology
- 2002

Nontraditional or geometric morphometric methods have found wide application in the biological sciences, especially in anthropology, a field with a strong history of measurement of biological form. Controversy has arisen over which method is the "best" for quantifying the morphological difference between forms and for making proper statistical statements… (More)

- JACQUELINE L. FRAIR, SCOTT E. NIELSEN, +5 authors HAWTHORNE L. BEYER
- 2004

1. Compared to traditional radio-collars, global positioning system (GPS) collars provide finer spatial resolution and collect locations across a broader range of spatial and temporal conditions. However, data from GPS collars are biased because vegetation and terrain interfere with the satellite signals necessary to acquire a location. Analyses of habitat… (More)

- Jonathan A Patz, Mike Hulme, +6 authors David Le Sueur
- Nature
- 2002

- Subhash R Lele
- Ecology
- 2006

It is well known that sampling variability, if not properly taken into account, affects various ecologically important analyses. Statistical inference for stochastic population dynamics models is difficult when, in addition to the process error, there is also sampling error. The standard maximum-likelihood approach suffers from large computational burden.… (More)

- José Miguel Ponciano, Mark L Taper, Brian Dennis, Subhash R Lele
- Ecology
- 2009

Hierarchical statistical models are increasingly being used to describe complex ecological processes. The data cloning (DC) method is a new general technique that uses Markov chain Monte Carlo (MCMC) algorithms to compute maximum likelihood (ML) estimates along with their asymptotic variance estimates for hierarchical models. Despite its generality, the… (More)

- B A Simon, C Marcucci, M Fung, S R Lele
- Journal of applied physiology
- 1998

Xenon-enhanced computed tomography (Xe-CT) is a technique for the noninvasive measurement of regional pulmonary ventilation from the washin and/or washout time constants of radiodense stable xenon gas, determined from serial computed tomography scans. Although the measurement itself is straightforward, there is a need for methods for the estimation of… (More)