#### Filter Results:

- Full text PDF available (4)

#### Publication Year

1995

1998

- This year (0)
- Last 5 years (0)
- Last 10 years (0)

#### Publication Type

#### Co-author

#### Journals and Conferences

#### Key Phrases

Learn More

- Suchendra M. Bhandarkar, Sridhar Chirravuri, Jonathan Arnold
- Journal of Computational Biology
- 1996

Ordering clones from a genomic library into physical maps of whole chromosomes presents a central computational problem in genetics. Chromosome reconstruction via clone ordering is usually isomorphic to the NP-complete Optimal Linear Arrangement problem. Parallel SIMD and MIMD algorithms for simulated annealing based on Markov chain distribution are… (More)

- Suchendra M. Bhandarkar, Salem Machaka, Sridhar Chirravuri, Jonathan Arnold
- Parallel Computing
- 1998

In this paper we present our practical experience with the design and implementation of a suite of parallel algorithms called PARODS, for chromosome reconstruction via ordering of DNA sequences. PARODS contains parallel algorithms based on an earlier serial algorithm ODS which is a physical mapping algorithm based on simulated annealing. The parallel… (More)

- Suchendra M. Bhandarkar, Sridhar Chirravuri, J. Arnold, David Whitmire
- Pacific Symposium on Biocomputing. Pacific…
- 1996

Ordering clones from a genomic library into physical maps of whole chromosomes presents a central computational problem in genetics. Chromosome reconstruction via clone ordering is shown to be isomorphic to the NP-complete Optimal Linear Ordering problem. Massively parallel algorithms for simulated annealing based on Markov chain distribution are proposed… (More)

- Suchendra M. Bhandarkar, Sridhar Chirravuri, Jonathan Arnold
- Computer Applications in the Biosciences
- 1996

A suite of parallel algorithms for ordering DNA sequences (termed PARODS) is presented. The algorithms in PARODS are based on an earlier serial algorithm, ODS, which is a physical mapping algorithm based on simulated annealing. Parallel algorithms for simulated annealing based on Markov chain decomposition are proposed and applied to the problem of physical… (More)

- Suchendra M. Bhandarkar, Sridhar Chirravuri
- Parallel Algorithms Appl.
- 1996

Taylor & Francis makes every effort to ensure the accuracy of all the information (the “Content”) contained in the publications on our platform. However, Taylor & Francis, our agents, and our licensors make no representations or warranties whatsoever as to the accuracy, completeness, or suitability for any purpose of the Content. Any opinions and views… (More)

- Suchendra M. Bhandarkar, Sridhar Chirravuri, David Whitmire
- ICPP, Vol. 2
- 1996

The Kz entropy, and the correlation dimension are commonly used measures of chaotic activity in com.plea: dynamic systems. The design and implem,entation of a massively parallel algorithm on the MasPar MP-2 for the computation of Kz entropy and the correlation dimension is presented. The algorithm is used to compute the Kz entropy and correlation dimension… (More)

- Sridhar Chirravuri, Suchendra M. Bhandarkar, David Whitmire
- IJHPCA
- 1995

- ‹
- 1
- ›