Soo-Jin Kim

Publications386
h-index31
Citations4,250
Highly Influential Citations216
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Characterization of a gene encoding cellulase from uncultured soil bacteria.
TLDR
Results showed that CelM2 is a novel endo-type cellulase that uses carboxymethyl cellulose as a sole carbon source and hydrolyzed avicel and xylan.
Clarification of the Mechanism of Clopidogrel-Mediated Drug–Drug Interaction in a Clinical Cassette Small-dose Study and Its Prediction Based on In Vitro Information
TLDR
A single 300 mg of clopidogrel mainly inhibits CYP2C8-mediated metabolism by clopIDogrel acyl-β-glucuronide, but its effect on the pharmacokinetics of OATP1B1 substrates is negligible.
Generation and Analysis of End Sequence Database for T-DNA Tagging Lines in Rice1
TLDR
Functional classification of these 1,846 tagged genes showed a distribution similar to that observed for all the genes in the rice chromosomes, indicating that T-DNA insertion is not biased toward a particular class of genes.
Screening and characterization of an enzyme with beta-glucosidase activity from environmental DNA.
TLDR
A novel beta-glucosidase gene, bglA, was isolated from uncultured soil bacteria and characterized, and a gene encoding a protein that hydrolyzes a fluorogenic analog of cellulose, 4-methylumbelliferyl beta-D-cellobioside (MUC), was isolated using a microtiter plate assay and sequenced using a shotgun approach.
PIE: an online prediction system for protein–protein interactions from text
TLDR
PIE (Protein Interaction information Extraction system) is a configurable Web service to extract PPIs from literature, including user-provided papers as well as PubMed articles, which results in high precision performance for Web users.
Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma.
TLDR
Phylogenetic, phenotypic and chemotaxonomic data obtained in this study indicate that strain RHs22(T) represents a novel species of the genus Spirosoma, for which the name SpiOSoma oryzae sp.
Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.).
TLDR
Induction of OsDhn1 by cold stress was clearcut in the roots of seedlings and the epidermis of palea and lemma, indicating that it is regulated by the CBF/DREB stress signaling pathway.
Description of Microvirga aerophila sp. nov. and Microvirga aerilata sp. nov., isolated from air, reclassification of Balneimonas flocculans Takeda et al. 2004 as Microvirga flocculans comb. nov. and…
TLDR
The results of DNA-DNA hybridization and the phenotypic data showed that strains 5420S-12(T) and 5420 S-16(T), isolated from air samples, could be distinguished from phylogenetically related species and represent two novel species within the genus Microvirga, for which the names MicrovirGA aerophila sp.
Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and 'Bacillus oryzicola' are later…
TLDR
The results of morphological, physiological, chemotaxonomic and phylogenetic analyses indicate that the strains share phenotype and genotype coherence.
Analyses of bacterial communities in meju, a Korean traditional fermented soybean bricks, by cultivation-based and pyrosequencing methods
TLDR
It is indicated that the bacterial communities in meju were very diverse and a complex microbial consortium containing various microorganisms got involved in me ju fermentation than the authors expected before.
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